RNA id: XM_043236051.1


Basic Information

Item Value
RNA id XM_043236051.1
length 1020
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC122342242
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19265355 ~ 19268050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCCAATTCCGAGTCATCACCTGTGGCTGATCCCTCCTGTTCTGATCTGGGTGATGAAAAGCTTAAAAAGTGGAGGAAGGGGAAAGCGGTCCGTGCGTTCTTCTTCAGAGATTCCATTGTCCGGAGTTCGACGCCACAGGTGGATCCAGACAGTGATGAGGATTTAGCAGATTGTGCCATTTCTTTTGAGTCTGAGCCAAGCTGTCAGACCGGTTCTGACCAGGCCAGTGAAGCTCTCCAGTCCCCCCCACCTGTGCAAGAGGCCAGTAGAGCACCTGTCTTTTTATTGGGAGATTTTCTAGGACGTGGAAGTTATGGCAAGGTGTATGAGGCAACCTACCTAGTTGGTGACAAAACGACGGTTGCCGTGAAGTACATCCATAAGCGTCAGAGTGACCATTATCTTCACCTTGctggtcattccaaacccgtgcTTGCAGAAGTGGCAATGTTGCTCAGGTTGGGAAAACCTCCATTATGCCCCAACGTCATCAAATTCCATGAATggactgaggaaaaaaatagcGCTGTGCTCATCATGGAGTACCCTAAACCTTGCTGTACCTTGAATGAGTACATCAAGCGCTCGAAGCCCATCAATGAAGAGAAAGCATGCTTGTTAATCCGCCAGTTAATCCAAGCTTTGAAACACTGCGTCGACCGAAGGGTCTTCCACGGCGACATCCACACGGGGAACATCCTAGTGACTCCCACTACTTTGGAGCTCAAGCTAATTGACTTTGGCTGCGCTCAACTGATCCACCGCGGGGGCAATCTCAGCAGTCAATATCGAGGAGCAACACTCTGCACCCCACCTGAGGTCATGAGGGATTCCACGCCCACGCCCCCGGCGTATGTCTGGGCTGTGGGCATGATGCTCTTCCAAATCCTGCATGGATATCTGccctttaaaagcaaagacaaaatacTGTGTAACTGCACTCCCGTGATTCGGACTTTATCCTCAGACCTGGTCTGTGAGGATGTAGAGTCCAGTGGTGTAACTACAATGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44189 lncRNA upstream 185166 19079768 ~ 19080189 (+) True G29809
TU44175 lncRNA upstream 211941 19045710 ~ 19053414 (+) True G29803
TU44169 lncRNA upstream 297641 18967387 ~ 18967714 (+) True G29797
TU44148 lncRNA upstream 332665 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 357531 18903235 ~ 18907824 (+) True LOC122343164
XR_006250695.1 lncRNA downstream 101721 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 137853 19405903 ~ 19406459 (+) True LOC122343189
XR_006250720.1 lncRNA downstream 146411 19414461 ~ 19414983 (+) True LOC122343198
XR_006250725.1 lncRNA downstream 245023 19513073 ~ 19513595 (+) True LOC122343203
TU44214 lncRNA downstream 418807 19686857 ~ 19692608 (+) True G29831
XM_043236050.1 mRNA upstream 114720 19147001 ~ 19150635 (+) True LOC122342239
XM_043236049.1 mRNA upstream 197472 19064025 ~ 19067883 (+) True LOC122342238
XM_043236046.1 mRNA upstream 302381 18960662 ~ 18962974 (+) True LOC122342236
XM_043237335.1 mRNA upstream 311756 18950727 ~ 18953599 (+) False LOC122343037
XM_043236055.1 mRNA downstream 177511 19445561 ~ 19449833 (+) True LOC122342246
XM_043236059.1 mRNA downstream 435849 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 477684 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA downstream 477684 19745734 ~ 19750074 (+) False LOC122343071
XM_043237373.1 mRNA downstream 769883 20037933 ~ 20043453 (+) True LOC122343063
TU43926 other upstream 378953 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 804038 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 964166 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2790974 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 3279629 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 22170 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 463212 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 477691 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 769888 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 794604 20062654 ~ 20062727 (+) True trnam-cau_2