RNA id: XM_043236062.1


Basic Information

Item Value
RNA id XM_043236062.1
length 1419
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122342262
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20043755 ~ 20045999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaatgacttttattttggtcgGACGATGTGACGTCATAAGGTCGCGCCGCTCTCCCGCGTCCGTGAATCAgctgaagaaaatgttttatttattttttttgtttcgaaCTCTATGCGATCGATAGAGCTCGTTTAAGCTCGCCGTTCTCTATATAGTCATTCAGCTACTACAGAATGAAACTCCGATACTTTGTCTAGTGATGTTAGCAAAGGTTTATGAGTGAAAGcggaaaaaacataaaagGGCTAAGTGTTACACGCTGTTATAAAGATGGCGTttgttaaagaggagagtgaagaaGCGAAGATTGAGGAAACCTTCAGAGTCAAACTAGAAGAAActgaggaacaaagaaagacCGTGTTTATTAAAGAACAGAGTGAAGAAACGTTCAGAATCAAAGAAGAAGATACCGAGGTACGGTTCATTAAAGAGGAGGCAGAGAGCGTGAAGACTGAAGAAACGTTCAGCGTCAAACGAGAAGAtactgaggaacaaacagACCTGGCGCTGCTGAAAAACGATATTCACGAACTGAGTGATACGAAAGATGAAGTTAACCATAACGACTTCCTAACCGGAGAGAATTTTAGTTGCTCGCAGACCGAAAAAACTCATAAGACCGACGCTACGAGTCATTTCgtctgccaacagtgtggaaataGTTTCGCTAAGAAAGAAAACCTTGAAGTCCACGTgagaattcacaccggagagaagcctttcagCTGCCAACGATGCGGGAAAGCtttcgcaaaaaaaaaagactttcagAGGCACGTGAAAACTCACACTAGAAAAAAGCCTCACGGGTGCAAACTGTGCGGAAACAGTTTTGTTGGCAGAGCGGACCTCGAAAtccacatgagaattcacaccggagagaagccgtacaCCTGCCCGCAATGTGAAAGGAGTTTCACGCGGAAACAAACTCTCAACGCCCACATAAGAACTCACACAGGAGAGAAACCTTActcctgccaacagtgtgggaAAAGTTTCTCCGTCAAAGGAAACCTTGAGGTCCACAAGagaatccacaccggagagaagcctttcaccTGCCCGCAGTGTGGGaaaagtttcattaaaaagacAGACTTCGAAAGGCACAGAAGAGTtcacacgggagagaagccttatgcctgccaacagtgtggaaagagcttttCTAATCCTGGAACCCTCAAAGGCCACCTGAAAATTCACACTAGAGAGAAACCTTtgacctgccaacagtgtggaaagaagTTCAAAAGCGAAGTGACTCTTAATAGCCACACGAAGATCCACTCGATAGTTGGATTTTATGTCCTCAGAGCAGAGGGAGTTTCACAGACCGAAAACGCCTTAAATGTGGCTTACAAGCCTTTATCGCACTACCGCGTCAAAAGAGGACGTTTCAAAGACTAG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 60861 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 63032 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 65129 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 172840 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 257627 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 141985 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 220837 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 277681 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 298365 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 391666 20437665 ~ 20438508 (+) True LOC122343173
XM_043237373.1 mRNA upstream 302 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 293681 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 293681 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 337428 19703899 ~ 19706327 (+) True LOC122342253
XM_043236055.1 mRNA upstream 593922 19445561 ~ 19449833 (+) True LOC122342246
XM_043236064.1 mRNA downstream 137654 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 298347 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 330411 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 345466 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 397347 20443346 ~ 20446136 (+) True LOC122342274
TU44267 other upstream 3560 20037938 ~ 20040195 (+) False LOC122343063
TU44225 other upstream 257627 19731262 ~ 19786128 (+) False G29835
TU44230 other upstream 296313 19745741 ~ 19747442 (+) False LOC122343071
TU44195 other upstream 700844 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 1157353 18883179 ~ 18886402 (+) True G29642
unassigned_transcript_309 other downstream 16655 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 18563 20064562 ~ 20064635 (+) True trnam-cau_3
unassigned_transcript_315 other downstream 20469 20066468 ~ 20066543 (+) True trnam-cau_4
unassigned_transcript_318 other downstream 22374 20068373 ~ 20068448 (+) True trnam-cau_5
unassigned_transcript_321 other downstream 24274 20070273 ~ 20070348 (+) True trnam-cau_6

Expression Profile