RNA id: XM_043236080.1


Basic Information

Item Value
RNA id XM_043236080.1
length 4975
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC122342284
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21071372 ~ 21081090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGAAGAAAGATCCGCACATGATCTGAAAACTTCCGATCAAGACCCAGCTAACTGGAGAAACGAGAAATATCTGCTTCATCTTTATTCATGCCATGAGTTGAAGGATGATGGCGTTTGTTAAAGAGCTGCTCGTGGATTCACTGAAGGAGCTGGTACAAGCTGAACTGAAGGAGTTTCATTGGCGCTTAATGAATGCATATCATAAGCATATCTCAAAGTCTGAAATGGAGAAGGCAGATGTATTAGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGATGAAGCTGTGAAGGTCACGGTAGACATCCTGAGAAAGATGAACCAAAATGATCTGGTTGATCAGTTGGTGAAAGAACACAAACAAGCTCAGACTGGGGACAATGTGAATATATCTGTTGAGGTTGGAGagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaacagaatatatttttgaggGCAACAAAGACAATGAAGCACAACTCAAGGCTGTTTACACTGAACTGTTCATCACAGAGGGAGATATGAAAGATGTTAATCACGAACATGAGATTCTGAAGATTGATGATGCcttcaagaacaaaaaaacacagaacaaaccaatcagatataatgatatatttactgaactgaggaaaaacaatgacaaaaagaTTGTGCTGACTAAAGGAGTcgctggaattggaaaaacagtctcCGTGCACAggttcatcctggactgggcaGAAGGAGAATCTAACCAGGATATACACTGTGTGTTCCTGCTTTCATTCAGAGAGATTAACTTAATGACAAATGAAGATTTCAGTCTTCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACTTGGAGAAATCAAAGCTATATACAGAATGTAAGctagcatttatatttgatggactTGACGAGAGTCGCCTGCCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATATGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCACTTGTCTGGGTGACATcacgaccagcagcagccaatcagattcctcCACGGTATGTGGGTTTATTCACAGAAGTGCAAGGATTCACTGACCAGCAGAAAGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTCCACCAGAATCATTTCACACATTAAGACGTCTCGTAgtctctacatcatgtgccacgTTCCGgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGACGGACATGAAGAACCAGAAATATGATGAACAAGAAGAAAGAGAATGTATAGAGTgcttacaattaaataaagagattattttaaagttagCTAAATTAGCATTTGAACAACTAAAGaaggaaaacattgtgttctatAAGGAAGATCTAAAAGCATGTGATATTGATGTGAGTAAAGACACTGAGCCCACAGGAATGATTGCTGAGATCTTCAGAAGGGAACACAGACTTCATGGAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTCGCTGCATTGCATGTGTTCATCTGCTATCTGAACAAGAACATGCAGGagcttcagtttttctttgatgGGCCAGAAGAAAATGTGACATTAGAAAAGTTACTGCAGAAGGCCATTGATAAAGCCATGGAGAGTCAGATAGGACATCTGGACCTGTTCCTGCGTTTTCTGATGGGAATTGCACTGGAATCCAGTCAAAACCTGCTCAAAGGCCTGATCACACATGCTGAAGACACCACAAAGATCATCATAAACATAAGtgaatacatgaaaaaaaaacaaaacgagtACATTATTTCAGATGAAGCTCTAGTAAACTTATTGTACTGCTTACTTGAGCTCAAAGATAACTCATTAAATGAAGAAATCCAGAAATACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGTACAGTGCTGACCAACATACTGTTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaAGCCCTatttgacggctgtggttttgatgaaacatgctgtgaaaCTGTGTCTTCTGCTCTACAATCATCAAATTCTCATCTGATAGAGCTGGACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgatttatgatggactgaagagttcacactgtcgactgaacatactgagGCTTTGTGGCTGTAGTCTCACTTCTCAGTCCTGTGAAAGATTGTCATTATCCctacaatcatcaaactctgtcctgagagagctggacctgagtaacaatgacctgcaggactCAGGAGTAAAGCTTCTGtatgatggactgaagagtccaaactctaAGATGGAGATTTTAAGattttccacatgtaatctcactgcGCAGTCTTGTGGGAGTTTGTCATCAGTTTTAGAAtcatcaaactctgtcctgaaagagctggacctgagtaacaatgacttGCAGGACTCAGGAGTAAAGCTtctttctgatggactgaagagtccaaactgtaaGCTGGAGATACTGAGGTTttctggctgtatggtgacagagaaaggctgttattatgtgtcttcagctttgagtCCACTGAACAAACTCAAAGTTGATCATGGAGGAGAAtccaggattacagcaggactCAAGAAATatGCATGTTttctcacactggatccaaacacagcgcACACTGATCTCcgtctgtctgaggagaacagaaaggTGACGTATGTGCTTGAGTCTCAGtcatatcctgatcatccagagagatttaatgatgtttatcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagatcGAGTGGAGTGGAGGTGTGtctatatcagtgtcatataagagcATCAGCAGGAAGGGAGGTGATGACTGTGTGTTTGGAaataatgatcagtcctggagtttggaCTGCTCTCCTGACGGTTACTCATACAGACACAATAACAGAGAGATTAATTTCCCTGTACagcccatcatcatcatcagaagaagaagatcaGGAGTGTCTGATAATATCAGAAGAACAGGAGTGTATGGTAATATCGctagagtaggagtgtatgtggatgagttcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTACCGTTTATTATGGATCATctgtgaaactgtgttgatgaatcagaagagactgatgagATTCTACCCAGAATGCTTTGAGCTGTGTAATGAAACAGTAATGGTGAGATATTATGAGCCTCTTCATGACATTAATACCGCAGCACAAAAgtgatatataaatagatataaatgcCAAAATAAATGTGTCAGAGATAAAAGGTTACTGGTATCCAACTGCCAGTAATCAAATTAGATTTACTTGACAGTAATAGCTTTACTGTATATTACTATCAGTATCAGTACAGtagagtttattttcatttattgaaaaatgttttacctgtaaaaatataaaaataaacaattttaattgtGGGACAGAACTGCAAACCATCACAACCCCCCCAAAATCATAACAActcattaatttaaattagacAGAGGTCCTGAAACACTGCCACACTCTCTAGCATCATTGTCTGCAGTATCGCAAAGATGCCCATGGTGGTCTTCTCAGTGGCACTCTGTAAAAGATCTTCCGTGTCCTAAAGATGAATATGTATTTAACATGTGAACAAGAAATATGTACCTTACTAGtcaaatcatttttagaaaatggcAGTGCTTACAGTGACCCCAATCTACTATCTTGTCCTATTAAAAGGcataatgcaaattattttaaagaaaggtccatcatttgttattttacattatgtttAACTTAAGAACTACAAAAATGCTGTTATCCTTATGAAAACTGTTTATTCAAGAGTGCTATTAGtatacttattttaaacttaaaataggAAAGTATACTCttagtttactttttatgtacATCTCAGAAATATGCTTAAAATTACATAAGTATACTTAACTTATActtagtatataatatatttattatatacttttatatttatttatatttatactttatattataactTCCGTACACAATTTCCAAAACACAAGCAAGGAAGAAACATTCTTCCAACAGCATAAAACAGCATCAAAACTCTGACTCtgactgacaaaaaaatgttatggaATAAAATGTTGATCCATGAAGAGAATAATGACGGACAAACTTTGGGCTGTTGATCGACTTCATCTGCATTTTGTTTATCATTATGAATCCATTCCATTCTATTCcattttttagctttttgttcaaatattcGTATAACAACATATATACAAATGAATACCTAGATGTAACCCGTATTAACTGCCGttaatatggatttaaataaagGCGTAATCGACATCGCTGATGAAAAATAGCGATGGTCTCTTTAAGAATGAGTGGCAGCAGTGAGTCAAGCCCCGCCTATCTTTTCTTGGTAGAGCTCATCAGAGAGAAAATTCTCGATTCTCTTAGAGTGGGAAGAGGCAGCTACAAGAAGCGATCTCCTAATCCTTCTTTGTAAGTGACTTAATTAGGGAAAAATTATCAGATATTACAGAAATCGTGATTTCTGAAGCTGAAATTCTAATGTGAAAGATTTACAGAACTGCAGAGTTAAAAAGTGCCACAAAAGAACTccttgaatatatttatttatccctTGGtgagattgatttaaatgtcTTGATAAAACTTGATATCT

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44875 lncRNA downstream 3184 21065914 ~ 21068188 (-) True G30301
TU44912 lncRNA downstream 17718 21052978 ~ 21053654 (-) False LOC122343098
TU44899 lncRNA downstream 97307 20972276 ~ 20974065 (-) True G30317
TU44880 lncRNA downstream 209901 20858984 ~ 20861471 (-) False LOC122343123
TU44867 lncRNA downstream 334212 20736146 ~ 20737160 (-) True G30293
TU44930 lncRNA upstream 36725 21117815 ~ 21126071 (-) True G30343
TU44981 lncRNA upstream 195132 21276222 ~ 21279043 (-) True LOC122343113
TU45004 lncRNA upstream 297492 21378582 ~ 21765825 (-) True G30394
TU45015 lncRNA upstream 314282 21395372 ~ 21783591 (-) False LOC122343153
TU45027 lncRNA upstream 411174 21492264 ~ 21492907 (-) True G30406
XM_043237423.1 mRNA downstream 17647 21048857 ~ 21053725 (-) True LOC122343098
XM_043237209.1 mRNA downstream 32973 21030443 ~ 21038399 (-) True LOC122342968
XM_043237199.1 mRNA downstream 108849 20949743 ~ 20962523 (-) True LOC122342960
XM_043237179.1 mRNA downstream 155532 20907255 ~ 20915840 (-) True LOC122342953
XM_043237499.1 mRNA downstream 179697 20888926 ~ 20891675 (-) True LOC122343141
XM_043237196.1 mRNA upstream 150670 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA upstream 150670 21231760 ~ 21247753 (-) False LOC122342959
XM_043237198.1 mRNA upstream 150670 21231760 ~ 21245263 (-) True LOC122342959
XM_043236085.1 mRNA upstream 169309 21250399 ~ 21276097 (-) True LOC122342288
XM_043237462.1 mRNA upstream 195133 21276223 ~ 21279043 (-) False LOC122343113
TU44338 other downstream 788972 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 832818 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 855133 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 857040 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 858050 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 246626 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 302379 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 302379 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 548527 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 656001 21737091 ~ 21740330 (-) True G30372

Expression Profile