RNA id: XM_043236082.1


Basic Information

Item Value
RNA id XM_043236082.1
length 713
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC122342285
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21167249 ~ 21167961 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCCAAActccacactggagagagacCTTACACTTGTGAACTGTGTGGGAAGAGCtacaaaagaaaggaaaatctTACATTTCACACAGGAATTCACAGCGGAGAGAAAACGTTCatctgctctcagtgtggaaagagttttaaacAGAAGAAGTACCTCAATGATCACATGACAATtcacacgggagagaagccGTTTGTTTGTGATCTGTGTGAAAAGAGTTTCAGGTGTAAAGGACACCTTGATCTTCACATGAAGAGTCACTCGGGAGAGAACTGTTTTATATGTCagcagtgtgggaagagtttctcACACAAAGGACACTTCGAGGATCACATGAGAACTCACTccggagagaagcccttcacctgtcctcagtgtggaaagagcttcacGGCTAAAGGAAACTTTAAGACtcacatgagagttcacactggagagaagccttacaagTGTCCTCAGTGTGACACCAGCTTCACGCATCACACAAACCTCAAGCGTCATATGCAGACTCATTCTGGAGAGAGTTTCCCAACTTCATGCCACACGGAGGAAGATAGTGTTACAACAATCACCTGAACATTTCCTCTGAAGAAAGATGATTGAGTTGAGATCAGATCAATGAACACATTCGTATCAAACCTCATGTGTTGAGTCCTATTTAGACAGGACTAGTTTTACATGGAGAGGTGCAATAAAGTATTACTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250681.1 lncRNA upstream 7 21163756 ~ 21167242 (+) True LOC122343163
XR_006250727.1 lncRNA upstream 33647 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 40829 21126085 ~ 21126420 (+) True LOC122343166
TU44529 lncRNA upstream 48727 21117661 ~ 21118522 (+) True G30056
XR_006250691.1 lncRNA upstream 195000 20971510 ~ 20972249 (+) True LOC122343171
TU44570 lncRNA downstream 80226 21248187 ~ 21248425 (+) True G30077
TU44588 lncRNA downstream 108149 21276110 ~ 21301007 (+) True G30090
TU44580 lncRNA downstream 143594 21311555 ~ 21337024 (+) True G30085
TU44614 lncRNA downstream 165284 21333245 ~ 21721910 (+) True G30104
TU44624 lncRNA downstream 201461 21369422 ~ 21374537 (+) True G30110
XM_043237398.1 mRNA upstream 6224 21156073 ~ 21161025 (+) False LOC122343080
XM_043237395.1 mRNA upstream 6224 21156080 ~ 21161025 (+) True LOC122343080
XM_043237397.1 mRNA upstream 6224 21156080 ~ 21161025 (+) False LOC122343080
XM_043237396.1 mRNA upstream 6224 21156080 ~ 21161025 (+) False LOC122343080
XM_043237211.1 mRNA upstream 54921 21093453 ~ 21112328 (+) True LOC122342972
XM_043236083.1 mRNA downstream 1232 21169193 ~ 21174340 (+) True LOC122342286
XM_043236084.1 mRNA downstream 9594 21177555 ~ 21182761 (+) True LOC122342287
XM_043237243.1 mRNA downstream 14276 21182237 ~ 21186135 (+) True LOC122342986
XM_043237205.1 mRNA downstream 54609 21222570 ~ 21230104 (+) True LOC122342966
XM_043237206.1 mRNA downstream 54609 21222570 ~ 21230104 (+) False LOC122342966
TU44534 other upstream 24418 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 460403 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 798433 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 919020 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 1060122 20107054 ~ 20107127 (+) True trnam-cau_25
TU44553 other downstream 1288 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 200682 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 220232 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 471579 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 1063509 22231470 ~ 22231924 (+) True G30218

Expression Profile