RNA id: XM_043236084.1


Basic Information

Item Value
RNA id XM_043236084.1
length 1894
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC122342287
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21177555 ~ 21182761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGAGCCCAGCagtgtgtctgtgaggattGACGTGTCTATAAAACAGCCATTGGATTTTAAGAGAGAAGATACAAAGACTGTTCTCAGTCCTCAACATGCTTAGAGCAAATCTGTTGAAGAAGTTTGAGCATCTGTGTGAGGGAACAGCGACGCAGGGAAAGCCAACACTCCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGCAGCAACAGAAGACACAGCCATCAAATGCAGTGACATCTTCAGATCTTTACCTGGACAAGACAAGGACGTCAGAACTGTGCTGACAAAGGGAGttgctggcattggaaaaacagtctctgtgcagaatTTCATTCTAGACTGGGCCAAAGGGAAAGAGAATCAGGACATCCACATcatatttccacttcctttcagagACATCAACTTGATGAAGGACAAAACACTCTCAGATCACTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatatccaggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccgaagagaaagagaatcaggatgtccagctcatatttccacttcctttcaAAGAAATCAACTTTATGAAGAGCAGAACACTCAGTCTTTCAGATCTTCTTCACATCTTTTTccctgaaataaaagaaatgaaaatatccAGTGATGAATACaaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctTGTCCCCTCTGAGTGCGTTCATCGAGTGACAGAGATACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGACTGTGCACTCAAATCTTTAGAGAGGAGCTGGGTTTGTTTAGGGGGAAGGTCTTCTGCTTCGTTCATCTGTCCCTTCAGGAACATCTAGCAGCTCTATATGTGTACCTCTCATTTACAATCAAGAATAGAAATGTGTTTGACCAAACCAAACAGAGTCTGTTGTCTAAGATGTTTCACCAGAAGAAATCTAATTCACTATCTGAGCTGCATCAGATAGCTGTAAACGAGGCTCTACAAAAGTCAGTGTTGGAGATCAAACTGTTCAGATTCATCATGAATGAAACAGAAACATCTGGAGATGAAGAGTATTCTCCAACCTGCAGttcagttcatcagaagagatcagaagtAGAGTCCAGCTGTTTGTCTATGAAGAGTGACAGGTCTATGGATCCGCCAGTGAACTTTAAGAGttcagttcatCAGAACAGTTCAGAAGCAgagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATATTAAGAGAGGAGATACGCGGCCTGTTCTCAGtcatgAAGTCCTCAACACATTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACACAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAAGAGAGGACACAGCTATCAAATGCAGTGATATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGGGAGttgctggcattggaaaaacagtctctCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250681.1 lncRNA upstream 10313 21163756 ~ 21167242 (+) True LOC122343163
XR_006250727.1 lncRNA upstream 43953 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 51135 21126085 ~ 21126420 (+) True LOC122343166
TU44529 lncRNA upstream 59033 21117661 ~ 21118522 (+) True G30056
XR_006250691.1 lncRNA upstream 205306 20971510 ~ 20972249 (+) True LOC122343171
TU44570 lncRNA downstream 65426 21248187 ~ 21248425 (+) True G30077
TU44588 lncRNA downstream 93349 21276110 ~ 21301007 (+) True G30090
TU44580 lncRNA downstream 128794 21311555 ~ 21337024 (+) True G30085
TU44614 lncRNA downstream 150484 21333245 ~ 21721910 (+) True G30104
TU44624 lncRNA downstream 186661 21369422 ~ 21374537 (+) True G30110
XM_043236083.1 mRNA upstream 3215 21169193 ~ 21174340 (+) True LOC122342286
XM_043236082.1 mRNA upstream 9594 21167249 ~ 21167961 (+) True LOC122342285
XM_043237398.1 mRNA upstream 16530 21156073 ~ 21161025 (+) False LOC122343080
XM_043237205.1 mRNA downstream 39809 21222570 ~ 21230104 (+) True LOC122342966
XM_043237206.1 mRNA downstream 39809 21222570 ~ 21230104 (+) False LOC122342966
XM_043237207.1 mRNA downstream 39809 21222570 ~ 21228457 (+) False LOC122342966
XM_043236086.1 mRNA downstream 109551 21292312 ~ 21305636 (+) True LOC122342289
XM_043237468.1 mRNA downstream 194777 21377538 ~ 21379639 (+) True LOC122343117
TU44553 other upstream 6960 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 34724 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 470709 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 808739 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 929326 20248111 ~ 20248229 (+) True LOC122343930
TU44625 other downstream 185882 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 205432 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 456779 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 1048709 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 1114136 22296897 ~ 22301519 (+) False LOC122342310

Expression Profile