RNA id: XM_043236086.1


Basic Information

Item Value
RNA id XM_043236086.1
length 3906
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122342289
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21292312 ~ 21305636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGCTGCCAGGGAGACATTTCTGTAGATtgtaacattcatttttatacttgattataagatttttttctcaattttgaaaaactaatcattctttttatttgcttatgtgggaagataaacaaaaataatgggAAGGCTTGGGAACTTGTTTAGTAAAAGAACGGGAAGTCTTCAGCTGTGGAGCTGAAAGGCATTTCCTTATTCATAGTCAGTGTTGGAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTTTCCAGACTGCAGGTcagttcatcagaagagatcagaagtAGAGCTCAGCTGTGTGTCTATAAAGAGCGACTGCTCTATGGATCCGCCAATGAAGTTTAAGAGTGAAGATATACAGCCTGGACTCAGTTCAattcatcagaagagatcagaagcagagtccagctgtgtgtctaCGAAGAGAGAGACATCAGTGATTCAGTCTTTAGAATTTAAGAGAAGAGTCCTCAACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCAACACAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccgaagagaaagagaatcaggatgtccagctcatatttccacttcctttcaAAGAAATCAACTTTATGAAGAGCAGAACACTCAGTCTTTCAGATCTTCTTCACATCTTTTTccctgaaataaaagaaatgaaaatatccAGTGATGAATACaaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctTGTCCCCTCTGAGTGCGTTCATCGAGTGACAGAGATACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCTTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCAAGCAGAGACTGGAGAAATTCCCAATActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaGGACTATGAGAAGAATGTGACTGATAAAGACATGATCCTCAAACTGGGGAAACTGGCTTTTCAGCAGCTTGTGAAAGGAAACTTGATTTTCTATGATAAAGACCTGAAAGAGTGTGGCATTGATGTGACAGAAGCATCAATTTATTCAGGACTGTGCACTCAAATCTTTAGAGAGGAGCTGGGTTTGTTTAGGGGGAAGGTCTTCTGCTTCGTTCATCTGTCCCTTCAGGAACATCTAGCAGCTCTATATGTGTACCTCTCATTTACAATCAAGAATAGAAATGTGTTTGACCAAACCAAACAGAGTCTGTTGTCTAAGATGTTTCACCAGAAGAAATCTAATTCACTATCTGAGCTGCATCAGATAGCTGTAAACGAGGCTCTACAAAGTAAGAATGGCCATCTGGATCTTTTCTTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAAACTCTCTTAAGAAAACTACTGATCCAGACAGGAAGCTGTCCCtacaacaaagagaaaacagctTATTTCATCAGACAGAAGATCACTGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAAGGTTATTTGAAATCTGGAGAAATAAGAAAAACCACACTATACACTTCTCAGTGGTCAGCTTTGGTTTATGTGTTGTTGACATCAGAGCAGAAGATGgatgtttttgatttaaaagagTTTATAGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGgctatgtggatgcaaactcactgctcagtcttgtggagagaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctaagctacaatcatcctggagattcaggagtcaagctgctctctgaaaaactggaggacTCAGCCTGCTCATTGGACAAGCTGAATGTGGATCATGGAGGAGAATTCAGGATTTCACCAGGAATGAAGAAATATGGTTGTTTTCTCACACTGGAtgcaaacacagcacacactcgtCTCggtctgtctgaggagaacagaaaggTGTCACGTGTGGAAGAGTATCagtcgtatcctgatcatccagacagatttgatcaTTGGGagcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagatcGAGTGGACTGGAGATGTGCGTATTTCAGCAtcatataagaacatcagcaggaagggacgaggtaaagagtgtgtgtttggatctgacgatcagtcctggagtttgtcCTGCTCTTCTGACAGAtactcattcagacacaataaCATAGAGACTGATCTCTCTGTGAAGCCAATCAGCATCAGAGGAACAGATTGGTATGATTTGGCAGGACTGTTTGATGATTATGTTCAATATATCAATAGAGTAGGAGTGTTtgtggatgagagcgcaggaactctgtccttttACAAAGTCTACAGAGGTtcaatgagactcatccacacagtccagaccacattcactcagacccTCTATCCTGGGTTTACTGTTTGGTCTGGATCCGTGAAACTGTGTTgctgaatcagaagagactgatgagATTCTACCCATAATGCTTTGATCTGCATGATGAATCAGTAACATTGAGATGTTATGAGTCTCTTCCAGACATTAATACTGCAGCTCAACTTCTGTCACTGAAATAAGTAAAGAAATGTGTCATAAACACTCAAAtcaattttgttttcatgtctcctcaaacatttactttatttctgttcaaatataaaaatgtcacaaacatgagtgaagaaaatgcaattaatttaggtgttgtttttgagaagaaataataaaacaatgacagATCAACTTGAGATCAGACTTTAATTGATGTTTCATCATTCATCATGAATATAATCGATTCCTGACAATGACATTctaaaaatgtgatattaatcagaatttaataaaatatattttgtaacgACGCTAAACCCATATTGAttgattatatttcaataaatgaaaactgtaagaatatatttgaaaaatattattttttgacagCAGAATATCATCATCATTGATCTTTTGctacaacacaatacaatacTCCTACTTTGTGGATTTCATGTAAGTGTGTTTTCCACcactaattaaagaaaaaataaatgaatagcaaCTTTTACCTCAcaattctgtctttattttctcagaattaaCCCAACTTTCACGAACGTGTATACACCAGATAACAcagataaatgcatttttatcaaagtactgcgttttcaagcaaaatacattcagatatcatgttcttttatttgaaaattattacATGACTAATTCAAATTGCATTCAGTAACcagaacaaacagacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44570 lncRNA upstream 43887 21248187 ~ 21248425 (+) True G30077
XR_006250681.1 lncRNA upstream 125070 21163756 ~ 21167242 (+) True LOC122343163
XR_006250727.1 lncRNA upstream 158710 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 165892 21126085 ~ 21126420 (+) True LOC122343166
TU44529 lncRNA upstream 173790 21117661 ~ 21118522 (+) True G30056
TU44580 lncRNA downstream 5919 21311555 ~ 21337024 (+) True G30085
TU44614 lncRNA downstream 27609 21333245 ~ 21721910 (+) True G30104
TU44624 lncRNA downstream 63786 21369422 ~ 21374537 (+) True G30110
TU44661 lncRNA downstream 173921 21479557 ~ 21522253 (+) True G30132
TU44664 lncRNA downstream 180076 21485712 ~ 21527011 (+) True G30133
XM_043237205.1 mRNA upstream 62208 21222570 ~ 21230104 (+) True LOC122342966
XM_043237206.1 mRNA upstream 62208 21222570 ~ 21230104 (+) False LOC122342966
XM_043237207.1 mRNA upstream 63855 21222570 ~ 21228457 (+) False LOC122342966
XM_043237243.1 mRNA upstream 106177 21182237 ~ 21186135 (+) True LOC122342986
XM_043236084.1 mRNA upstream 109551 21177555 ~ 21182761 (+) True LOC122342287
XM_043237468.1 mRNA downstream 71902 21377538 ~ 21379639 (+) True LOC122343117
XM_043236090.1 mRNA downstream 93181 21398817 ~ 21400148 (+) True LOC122342293
XM_043236091.1 mRNA downstream 141604 21447240 ~ 21449510 (+) True LOC122342295
XM_043237315.1 mRNA downstream 143881 21449517 ~ 21452862 (+) True LOC122343031
XM_043237301.1 mRNA downstream 338683 21644319 ~ 21650178 (+) False LOC122343024
TU44553 other upstream 121717 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 149481 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 585466 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 923496 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 1044083 20248111 ~ 20248229 (+) True LOC122343930
TU44625 other downstream 63007 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 82557 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 333904 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 925834 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 991261 22296897 ~ 22301519 (+) False LOC122342310

Expression Profile