RNA id: XM_043236094.1



Basic Information


Item Value
RNA id XM_043236094.1
length 570
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC122342299
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21629480 ~ 21630158 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGTTTACTTGTTACTTTTCTCACCTCAGACCCGATGGTGCTGAAAGAGGAGAGCCAAGAACGAAACGAGTATCGCCGCGATTTCAAAACGGAAGAGGAATCGATCGGTTGCCGCCGAGTCGAAAAGACCCCCTTGGCAAAAACGGCGCAAGCCGCAGGCGTTGATTCTCGGCCGAGCGCTCGTCCCGGAGAGGCCCCTTTCACCTGCCAGCAGTGCGGAGAGATCTTACCCCACAAAAGAAGCTTTAAAGTCCACGTGAAAATCCACGCCGAAAAGCAGCCGTTGCTGTGccctcagtgcgggaagagtttcacgCGGAAATACAACCTCAACTCCCACATGAGGACGCACACCGGCGAGAGGCCCTACCCCTGTAcgcagtgcgggaagagcttttCGCAGACGAGCCAGCTCAACGTccacatgaggatccacacgggagagaagcctttcaGCTGCGAGCTCTGCGGCAAGAGCTTCAGGCAAAGCGCCGAGCTCAAAGCCCACGCCACGAcgcacaccggagagaagccttacgcGTGCCACCAGTGCGaaacagagagaacatGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45029 lncRNA downstream 129482 21499638 ~ 21499998 (-) True G30408
TU45027 lncRNA downstream 136573 21492264 ~ 21492907 (-) True G30406
TU44981 lncRNA downstream 350437 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 503409 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 561292 21065914 ~ 21068188 (-) True G30301
XR_006250701.1 lncRNA upstream 38652 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 38652 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 43565 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 46718 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA upstream 139421 21769579 ~ 21772200 (-) False LOC122342302
XM_043237341.1 mRNA downstream 87191 21537322 ~ 21542289 (-) True LOC122343039
XM_043237212.1 mRNA downstream 100534 21517473 ~ 21528946 (-) True LOC122342973
XM_043236092.1 mRNA downstream 134251 21487205 ~ 21495229 (-) True LOC122342296
XM_043237304.1 mRNA downstream 142275 21484781 ~ 21487205 (-) True LOC122343027
XM_043237508.1 mRNA downstream 232575 21387853 ~ 21396905 (-) True LOC122343153
XM_043237426.1 mRNA upstream 21206 21651364 ~ 21653997 (-) False LOC122343099
XM_043237425.1 mRNA upstream 21206 21651364 ~ 21653926 (-) True LOC122343099
XM_043237332.1 mRNA upstream 25744 21655902 ~ 21662833 (-) False LOC122343036
XM_043237331.1 mRNA upstream 25744 21655902 ~ 21662833 (-) True LOC122343036
XM_043237330.1 mRNA upstream 25744 21655902 ~ 21662829 (-) False LOC122343036
TU45006 other downstream 243043 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 243502 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 299387 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1347080 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1390926 20237137 ~ 20238554 (-) True G29902
TU44977 other upstream 106933 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 498296 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 585877 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1804822 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1866971 23497129 ~ 23546369 (-) False G31017

Expression Profile