RNA id: XM_043236099.1


Basic Information

Item Value
RNA id XM_043236099.1
length 1401
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC122342303
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21775098 ~ 21780619 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCATACTGTGCGGAAAGAACTTCAATCAAAAACCATCCTGAAAAGCCACATAcggattcacaccggagagaaacctcACGCGTGTCCTCAGTGCGGAAAATGCTTTTCGTATAAACAGCACCTCGTCGACCACGtgagagttcacaccggagagaagccgttcgCCTGCAAACTGTGCGGAAAGAGCTTCATTCAGAAACAGAACCTGAAATACCACATGTTAGACCACAGCGGAGAGAAACCGTACACGTGCTCTCAGTGCGGAAGGagttttaaacacaaacacctcGACGAccacatgaggatccacaccggagagagaccTTCACCTGCCAGCAGTGTGAACTTCATTCGGAAGCAGAACCTCAAGTACCACATGATAAGTCACAGCGGAGAGAAGCCTCACGCGTgtcctcagtgtggaaagagtttcaaacACAAGCAGCACCTCGACGCCCACACGAGGACCCACACGGAGAGAGACCCTTCACCTGCCagcaAACAAACTCCTGCGAAGAGGCCGAGGTCCACGGGGCGCCATATAAAGATGGCTTTGGtgaaagaggagagtgaagagCGTAAAGATCGAAGAAACACTGAGAGTCAAGCACCCGATGGTGCTGAAAGAGGAGAGCCAAGAACGAAACGAGTATCGCCGCGATTTCAAAACGGAAGAGAATCGATCGGTTGCCGCCGAGTCGAAAAGACCCCCTTGGCAAAAACGGCGCAAGCCGCAGGCGTTGATTCTCGGCCGAGCGCTCGTCCCGGAGAGGCCCCTTTCACCTGCCAGCAGTGCGGAGAAATCTTACCCCACAAAAGAAGCTTTAAAGTCCACGTGAAAATCCACGCCGAAAAGCCGCCGTTGCTGTGccctcagtgcgggaagagtttcacgCGGAAATACAACCTCAACTCCCACATGAGGACGCACACCGGCGAGAGGCCCTACCCCTGTGcgcagtgcgggaagagcttttCGCAGACGAGCCAGCTCAACGTccacatgaggatccacacgggagagaagcctttcaGCTGCGAGCTCTGCGGCAAGAGCTTCAGGCAAAGCGCAGAGCTCAAAGCCCACGCCACGGCGCACACCGAGAGAAGCCTTCTGCGCGTGCCACCAGTGCGGCAAGAGCTACACGCAGAACAGCCAGCTCACCATCCACACGAGGATCCACACGGGAGAGAAGCCCTTCTCCTGCGCCGTGTGCGACAAGAGCTTCACGGTCAAGCGGCGCCTCAAGGCCCACATGAAGAGCCACGCCGAGAAGAACCCCTTCACGTGCTCCCGCTGCGGAAAGAGCTTCACGCCAGAAGCGCACCCTCGCCCACCACGGTGATCCACACGGAGAAGCCGTTCAGCTGCCCGCTGCTGCGAAGAGCTTCCGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45070 lncRNA downstream 2898 21769579 ~ 21772200 (-) False LOC122342302
TU45004 lncRNA downstream 9273 21378582 ~ 21765825 (-) True G30394
TU45062 lncRNA downstream 98967 21673723 ~ 21676131 (-) True G30425
XR_006250701.1 lncRNA downstream 101674 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA downstream 101674 21668810 ~ 21673424 (-) True LOC122343179
TU45132 lncRNA upstream 500053 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 578598 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA upstream 615899 22396518 ~ 22398023 (-) True LOC122343195
TU45181 lncRNA upstream 644973 22425592 ~ 22428757 (-) True G30506
TU45193 lncRNA upstream 706156 22486775 ~ 22487119 (-) True G30518
XM_043236098.1 mRNA downstream 2699 21769124 ~ 21772399 (-) True LOC122342302
XM_043236095.1 mRNA downstream 38557 21714679 ~ 21736541 (-) True LOC122342300
XM_043237332.1 mRNA downstream 112265 21655902 ~ 21662833 (-) False LOC122343036
XM_043236101.1 mRNA upstream 66501 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 89796 21870415 ~ 21878772 (-) False LOC122343106
XM_043237439.1 mRNA upstream 89797 21870416 ~ 21878792 (-) True LOC122343106
XM_043237393.1 mRNA upstream 455138 22235757 ~ 22239007 (-) True LOC122343076
XM_043237479.1 mRNA upstream 535289 22315908 ~ 22320097 (-) True LOC122343126
TU44977 other downstream 34768 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 388661 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 389120 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 445005 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1492698 20281106 ~ 20282400 (-) True G29906
TU45110 other upstream 347835 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 435416 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1654361 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1716510 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1964867 23745486 ~ 23771768 (-) True G31050

Expression Profile