RNA id: XM_043236100.1


Basic Information

Item Value
RNA id XM_043236100.1
length 1049
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122342305
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21841181 ~ 21842230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCCTTGCAATGCACATGAAATTTCACATTGAAAAGAAACCTTCAATAtgccctcagtgtggaaagagttttacacGGAAACAATATCTTAATGTCCATATGACagttcacaccggagaaaaACCTTACACTTGCAAactgtgtgggaagagtttcagaCAGAAAAGTACACTTGACGCCCACATAAAACGCCACACTGGAGAGAGACCTTGCACCTGCAAactgtgtgggaagagtttctcGAAAGAGTATTTTAAGATTCACATGAAAATTCACactgaaaagaaaccattaaTATGctttcagtgtggaaagagttttacagaaaaaaaactatttaaagatcACATGAGAATTCAGGGAGAGAGACCTTTTACCTGCAAactgtgtgggaagagtttctcACGTAAAGACAGCCTTAAGGTTCACTCGAGGATtcacacgggagagaagccTTTTACATGTGTTCAGTGTGGAAAGGGTTTTACACAGAAAAGCATACTTACTTGCCACATTAGactccacactggagagaagcctttcaccTGCCCTcaatgtggaaagagttttaggATTAAAAGAAACCTACAGGATCACATAAGAAGCCACACCGGGGAGAATCCGTTCACATGCGATCAGTGTGGAAGGACTTTCAGATATAAAGAAAACCTTAATTATCACATCAGTACTCACTCAAGAGAAATCAGGTTTAAATGTCATCAATGTGAAAGAAGTTTCACAGACACGAATCACCTCCAGGAACATGTTAAAATTCACATCGGAGAAAAGCCTTTCATGTGCCATCACTGTGGGAAGAGTTGCTCAAAAAGAGATCACCTCAGAGATCACGTGAGAagtcacactggagagaagcctttcacctgtgatcagtgtggaaagagtttcagtgCTAAACGGACCCTAAAGACTCACGTAtggattcacaccggagagagaccTTACAGGTGTCCTCGGTGTGAGAAGACTTTCAGAAGCCAAAGCAGCATGAAACGTCATTCGCAAACTCATTCTGGAAAGAAAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44657 lncRNA upstream 29897 21749010 ~ 21811284 (+) True G30130
TU44614 lncRNA upstream 119271 21333245 ~ 21721910 (+) True G30104
TU44664 lncRNA upstream 314170 21485712 ~ 21527011 (+) True G30133
TU44661 lncRNA upstream 318928 21479557 ~ 21522253 (+) True G30132
TU44668 lncRNA upstream 341667 21498864 ~ 21499514 (+) True G30136
TU44748 lncRNA downstream 299114 22141344 ~ 22255433 (+) True G30205
TU44753 lncRNA downstream 320408 22162638 ~ 22240294 (+) True G30206
TU44760 lncRNA downstream 332725 22174955 ~ 22252519 (+) True G30212
TU44775 lncRNA downstream 408205 22250435 ~ 22251792 (+) True G30226
TU44782 lncRNA downstream 431581 22273811 ~ 22280970 (+) True G30233
XM_043237329.1 mRNA upstream 26744 21809156 ~ 21814437 (+) True LOC122343035
XM_043237293.1 mRNA upstream 32102 21673802 ~ 21809079 (+) True LOC122343020
XM_043237294.1 mRNA upstream 32102 21673802 ~ 21809079 (+) False LOC122343020
XM_043236096.1 mRNA upstream 80000 21743635 ~ 21761181 (+) True LOC122342301
XM_043237502.1 mRNA upstream 98876 21741323 ~ 21742305 (+) True LOC122343144
XM_043237385.1 mRNA downstream 261088 22103318 ~ 22104932 (+) True LOC122343067
XM_043237344.1 mRNA downstream 263006 22105236 ~ 22107457 (+) True LOC122343041
XM_043236103.1 mRNA downstream 454667 22296897 ~ 22305148 (+) True LOC122342310
XM_043236104.1 mRNA downstream 561823 22404053 ~ 22405822 (+) True LOC122342312
XM_043237291.1 mRNA downstream 591824 22434054 ~ 22446278 (+) False LOC122343018
TU44625 other upstream 80003 21368643 ~ 21761178 (+) False LOC122342301
TU44630 other upstream 199425 21639540 ~ 21641756 (+) True G30115
TU44637 other upstream 211061 21388193 ~ 21630120 (+) True G30119
TU44553 other upstream 670586 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 698350 21118562 ~ 21142831 (+) True G30058
TU44767 other downstream 389240 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 454667 22296897 ~ 22301519 (+) False LOC122342310
XR_006250667.1 other downstream 819596 22661826 ~ 22682712 (+) False LOC122343019
TU45293 other downstream 935812 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 1286876 23129106 ~ 23130189 (+) True G30636

Expression Profile