RNA id: XM_043236114.1


Basic Information

Item Value
RNA id XM_043236114.1
length 2496
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122342323
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23201470 ~ 23219173 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgaggaagaaagtaaaatgtatttttgagggAAACCAAGAAAACGACACAGATCTCAAGACTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAGATATGTCAATAACAaacatgaaattcaaaagactGTTGATgctttaaagcacaaaaaaacactggacAAACCAATTAGATGCAATGATATATTCACTGAACTGAGGAAAAACAATGAGGAGAAGATTGTGCTGACCAAGGGAGttgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgtttctgctttCATTCAGAGAGATCAATAagattaaagaaagaaaggtcAATCTACATGAGTTTCTGCTCAAATTTTATTCTGAATTAAAGAACCTAGAGAAATCAAAGCTATATACGGAATGTAAGctagtatttatatttgatggacttgatgagAGTCAACTGCCATTGGACTTTGATAGTAAAACACTGGATACTGTGGAGAAAAGATCAGCTGTAGATATGCTGTTTACCAGTCTGGTGAAAGGGACTCTGCTTCCCTCGGCTTTTGTCTGGGTGACATCACGACCAgtatcagccaatcagatccctccTCAGTATGTAGGTTTGTTCACAGAGGTTCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGGATCACAGATGAGAGTCTGGcctccagaatcatctcacacattaagacatctcgtagtctctacatcatgtgccacaaTCCTCtgttctgctggatcacagccacagtacttcaggacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctTGTGATACAGATGAACACAAAGAGCCAAAAGtatgatggaaaaaaacaaagtcaaCGTACACAGCTCTtagatgcaaataaaaaaatgattctgaAATTAGCCAAGCTAGCATTTAAACAGCTAAAGAAGGGAAACATGATGTTCTATGAGAAAGATCTTGAAAAGTGTGGTATTACTGTGACTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCAGTAAAAAGGAAGATGGACTTTACAAGACAAAGGTTTTCTCCTTTGTGCATCAGAGTGTTCAAGAGTTTCTtgctgcagtgcatgtgttTCTCTGCTACCTGAACAAGAACATGCAGGAGCTTAAGTTTTTCTTCAAAGATTCACAAACTACAGCCAGACAAaaaattttgttcttttttagaGCTGTCAAATTTGTTGACTTAACGAAGAGGGCCActgaaaaagcaatgcaaagcAAGAAAGGACATCTGGACCTGTTCCTGCAGTTTTTGATGGGAATTTCACTGGAATCTAATCAAAATATGCTCAAaggcctgatcacacacacaaaagacacTACTGTGAGCATCAGAAAAATAAGTGCACACattaaacaattacaaaaacaggACATCTCAGATGAAACTTCAGTCAACCTATTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATAAATCAATACTTAAGTTCAAATAAACGTCCAGAAAGAGACCTCTCCTCTTCAATGTGCACAGTGCTGACCTATGTATTGCTGATGTCAGAGAAGGTACTGGAGGAATTTAATCCAAAGCAGTACACGTCCTCATCTTCAAACTTCAAGAGACTTGTCCCAGCTGTGAGATGCTGCAAAAAAGCACTATTTGATGGCTGTGGTCTTGATGAAAAATACTGTGAAACTGTGTCTTCAGCTCTACAACTGACAAATTCCCATCTGACAGAGTTGGACTTAAGTAGCAATGACCTGAAGGATTCAGGAGTAAAGCTGATTTATGATGGCCTGAAGAGTCCACACTGTCAACTAAGCATACTGAGACTATGTGGATGTAATCTCACTGCAAAGTCCTGTGAAAGCTTGGCTTCTGCTCTACAATCCTCAAGCTCTGTcttgagagagctggacctgagtaacaatgacctccatgattcaggagtgaagcttcttTCTGATGGACTAAAGAGTCTAAACTGTCAACTGAATATACTGAGATGTTCTAtatgtaatctcactgcacagtcttgtgagagtttgtcttcagttttacaatcctcaaactctctcctgaaagagctggatctgagtaacaatgacctgcaggattcaggactAAAGCTTTTTTCTGATGCACtaaagagtccaaactgtcagcTGGATATATTGAGattACCGCTGCACACCCCTAACAGTGATTCAGTTAATTTGATTGGCAACTCACTTGATGGAATTGAAAACATCACATCCTTTGCCAATGATGCCAATGATGTGAAGCACATCAACAATCGCCACCAGCACATAGCAGAAGAACTCACACAATTACAAAGAGTGATTCTCTGTGCTGATGATGCCATCATGATGCCAAATACCGAGAGGAGGTCTTGA

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45790 lncRNA downstream 147850 23051748 ~ 23053620 (-) True G30967
TU45749 lncRNA downstream 339850 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA downstream 339850 22858259 ~ 22861620 (-) True G30938
TU45737 lncRNA downstream 412168 22787546 ~ 22789302 (-) True G30926
TU45728 lncRNA downstream 428616 22770855 ~ 22772854 (-) True G30920
TU45822 lncRNA upstream 44559 23263732 ~ 23264216 (-) True G30992
TU45823 lncRNA upstream 46585 23265758 ~ 23266130 (-) True G30993
TU45824 lncRNA upstream 47452 23266625 ~ 23266858 (-) True G30994
TU45844 lncRNA upstream 172506 23391679 ~ 23397273 (-) True G31012
XR_006250676.1 lncRNA upstream 235104 23454277 ~ 23455816 (-) True LOC122343160
XM_043236113.1 mRNA downstream 3855 23196547 ~ 23197615 (-) True LOC122342322
XM_043237504.1 mRNA downstream 345338 22840016 ~ 22856132 (-) True LOC122343148
XM_043237500.1 mRNA downstream 419216 22781662 ~ 22782254 (-) True LOC122343143
XM_043237282.1 mRNA downstream 431896 22759421 ~ 22769574 (-) True LOC122343013
XM_043237408.1 mRNA downstream 508760 22690338 ~ 22692710 (-) True LOC122343088
XM_043236115.1 mRNA upstream 10869 23230042 ~ 23237080 (-) True LOC122342324
XM_043236116.1 mRNA upstream 20902 23240075 ~ 23250614 (-) True LOC122342325
XM_043237389.1 mRNA upstream 37192 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA upstream 37192 23256365 ~ 23259319 (-) True LOC122343073
XM_043236117.1 mRNA upstream 197718 23416891 ~ 23435525 (-) True LOC122342328
TU45110 other downstream 956310 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 985000 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1424664 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1461140 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1815033 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 215807 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 277956 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 526313 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 891051 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1084923 24304096 ~ 24497596 (-) True G31134

Expression Profile