RNA id: XM_043236116.1


Basic Information

Item Value
RNA id XM_043236116.1
length 3680
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC122342325
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23240075 ~ 23250614 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCGTTTGTCAAGGAGCTGCTCGTGGGGTCACTGAAGGGGCTGGTAGAAGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATACATATCATAAGCATATAACAAAGTCTGAATTGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGAAGAAGCTGTGGAGGTCATGGTAGATATCCTGAGAAAGATGAACCAAAATGATCTGGCTGAACAGTTGGTGAAAGAACACACGCAAGctcAGACGGAGGGCAATATGAATATATCTGCTGCTGTTGGAGcagcagccaatctgATTCCTCCTCAGTATGTAGGTTTGTTCACAGAGGTTCGAGGATTTACTGACCAACAGAAGGAGCAGTACTTCACAAAGAGGATGAAAGATCAAAGTCTGTcctccagaatcatctcacacattaagACGTCGCGTAgtctctacatcatgtgccacattccTGTATTCTGCTGGATCACAGCCACAGTACTTCAGGATATTCTCACAGAGAACAATGAAGAGAACATAAGCACAACactcactgaaatgtacattgaCTTTTTGCTAATACTGTTGGATATGAAGAACCAGAAATTCGATGAACAAGATGAAAGAGAATGTTCAGAgcacttaaaattaaatagagaAATCATTTTGAAGTTAGCCAAGCTAGCATTCGAACAGCTGAAGaaggaaaacattgtgttctatAAGGAAGATTTAAAAGCATGTGGTATTAATGCGAGTAAAGAAACTGAGTTCACAGGAATGATCGCtgagatttttaaaagggaACGCAGACTTCATGGAGCAAAGGTTTTCACCTTTGTGCATCTGAGTGTTCAAGAGTTCTTCGCTGCAGTCCACGTGTTCCTCTGTTATCTGAACAAGAACATACAAGagcttcagtttttctttgatgGGCCAGAAGAAAATGTCACATTAGAGAAGTTACTACAGAAGGCCATTGAAAAAGCCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTGCGGTTTCTGTTGGGCATTTCACTGAAATCCAGTCAAATCCTGCTTAAGGGCCTgatcacacacactgaagacaCTACAGAGAGCATCATGAGAATAAGTgaatacattaaacaaaaacacaacaaAGAAGGTGCTGGACGAGTTCAACCCAAGAGGTTCACATCAAAACAAGCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaAGCCCTATTTGACGGCTGTGGTCTTGatgaaacatgctgtgaaaCTGTTTCTTCAGCTCTACAATCACCTAAATCTCATCTAACAGAGCTGGACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagtccacaCTGTCATCTGAACATACTGAGGCTGTGTGGCTGTAATGTCACTTTTCATTCCTGTGAAAGTTTGTCCTTAGCCCTACAATCCTTAAACTGTGTCCTGAgtgagctggacctgagtaacaatgacctgcaggattcaggagtgatgctgctttctgaaggactgaagagtccaaactcaAAGCTGGAGATTTTAAGATTTTGCAtatgtaatctcactgcacagtCTTGTGGGAGTTTATcgtcagttttacaatcctcaaactctgttctgagagaactggacctgagtaacaatgacctacaggattcaggagtaaagcttctttctgaaggactgaagagtccaaactccAAGCTGGAGACACTGAgGTTGTCTGGCTGTATGCTGACAGAGaaaggctgtggttatgtgtctttagctctgacttcaaacccctcacacctgagagagctggatctaagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcTCTGAACAAATACAAtGTGGACCATGGAGGAGAAtccaggattacagcaggactGAAGAAATatgagtgttttttcacactggatccaaacacagcacacactaaaCTCagtctgtctgaggagaacagagagGTGACAGgtgtgtctcagtctcagtcgtatcctgatcatccagacagatttgattgTGTGCCTCAGGTGTTGTgtcgagagagtgtgtgtggacgctgttactgggagaccGAGTGGAGCAGAGATACTGTGTCtgtatcagtgtcatataagaacatcagcaggaagggaGAGGgtgcagagtgtgtgtttggacgtaatgatcagtcctggagtttgcgCTGCACTCCTCACAGAtactcattcagacacaataaCATAATGACTGATCtctctgtgaagcccatcaGCATCAGCAGAAGAACAGGAGTGTATGATGATATCTATAAAGTAGGggtgtatgtggatgagagcgcaggaactctgtccttctacaacatctctgacacaatgacacatttacacacagtccagaccacattcactcagacccTCTGTCCTGggttttatctttattattctggctcatcagtgaaactgtgtcgatgaatcagaagagactgagCAGAGTTGTAGGGAATCGGTGTGAATTAGACAATCAGGGTCGAGTTCCACAAAGAGGCTTGCAACATTAACACAAACATTTCAATTCAGGAAGAAGATTTTCACTTTTAGGCCAAGTAACCAAGATTCATGGTCAAAAACACAGCACATCATCAACATAACAtgggtaaaataataaaaaagaatctgTTGGATGCATCTCCATCCCCCCACTCAGAACACAGAACTTTTAACCTTTGGTTTGCACAGAactaattttgttttcatccacATGCATGCTCAAAATCATCTTAAAAAGACTTTAATCACTTATATGCATAACTGCATATTATATGTAACCCACATGTTTAACTATCACATGCTAATCGCtaattgttaatgtatttggaATAACTACACGCATAACAAACTATTGTTTGGTATGCGTGATCTTCAATTTCCCacctttgaaatgttttttccaaCCAATCCTTGGCCAAATGTATCATATTCGTGTTCTAGAAATCATGTCCAATATTGTACTCTGCAAGAGCACATATTTATGACAGACTCTTATTGCTACGGAAAAAGGCTAGGATATATGTTGTTTCTCCTCTTGCTCTTTGATTGAAAATCACAACCAAAAATTGACACTATGGTATCttatcagaattttattttcgGGACTGTTTTTTCTGATTAGTGTTGCAGTTAAAAGTCACCAAGTGCAACCATTTGACATCATTGACACAGAATGTACTGTGcactgtactgtaaaataatggcGACCCATAGTCCAGAAATAGCTGTCaatcttttaaataacatacatcTTTCATGGGTTTCTATTACACGTTTCAGTAAGAGacatcatttatgttttattaggCTATCAATGTCTTAACACGCAGGGATCCCTTCAATCTTAACCTCATTGAGGAACTCAATGTGAGGGTTAATCATGTGATTGATGGTTGTTCAGGTCTATGCAATTTCCCACATTGCTGTAAACTTgggatttcacattttcattctcttgaacacactttctctctgttCCTTCAACTCATATGaatgagtgtgtttatgtgttagTTTATGTGTCTTATCCAATAAAgccatatttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45790 lncRNA downstream 186455 23051748 ~ 23053620 (-) True G30967
TU45749 lncRNA downstream 378455 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA downstream 378455 22858259 ~ 22861620 (-) True G30938
TU45737 lncRNA downstream 450773 22787546 ~ 22789302 (-) True G30926
TU45728 lncRNA downstream 467221 22770855 ~ 22772854 (-) True G30920
TU45822 lncRNA upstream 13118 23263732 ~ 23264216 (-) True G30992
TU45823 lncRNA upstream 15144 23265758 ~ 23266130 (-) True G30993
TU45824 lncRNA upstream 16011 23266625 ~ 23266858 (-) True G30994
TU45844 lncRNA upstream 141065 23391679 ~ 23397273 (-) True G31012
XR_006250676.1 lncRNA upstream 203663 23454277 ~ 23455816 (-) True LOC122343160
XM_043236115.1 mRNA downstream 2995 23230042 ~ 23237080 (-) True LOC122342324
XM_043236114.1 mRNA downstream 20902 23201470 ~ 23219173 (-) True LOC122342323
XM_043236113.1 mRNA downstream 42460 23196547 ~ 23197615 (-) True LOC122342322
XM_043237504.1 mRNA downstream 383943 22840016 ~ 22856132 (-) True LOC122343148
XM_043237500.1 mRNA downstream 457821 22781662 ~ 22782254 (-) True LOC122343143
XM_043237389.1 mRNA upstream 5751 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA upstream 5751 23256365 ~ 23259319 (-) True LOC122343073
XM_043236117.1 mRNA upstream 166277 23416891 ~ 23435525 (-) True LOC122342328
XM_043237441.1 mRNA upstream 475138 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 566235 23816849 ~ 23929534 (-) True LOC122343128
TU45110 other downstream 994915 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1023605 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1463269 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1499745 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1853638 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 184366 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 246515 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 494872 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 859610 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1053482 24304096 ~ 24497596 (-) True G31134

Expression Profile