RNA id: XM_043236125.1


Basic Information

Item Value
RNA id XM_043236125.1
length 1748
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC122342338
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24312842 ~ 24319112 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acgcatacacatacTAAAACATGTTTAGTACCCCGACTGTGCTTTTATGTCTATGACAATTGactaaatgttcaaaataaaagtttcggACAAAATGAGTAACTACACAGAAACCTAGCACCGAGTATATGAGtatagctgtttttaattttatttatttcgtttttttaatacttGCTTGGGAAACACAACcgtgagagagaaaaacacgaAAAACgaatcaatcaatcgatcaaATAATAAACGCGACACTTTTTTCTGCCGTTATGATTCGTAAATAGTCGTGATGACGTCGCTGGCGCTCGCGCCGCTGTCGGCCAATCAGAGGCGCCGGCCCCGCCCCTCCGCTTCAGTCCGCGCGCGGTAAACCGGGCAGAATGAGCGCGTCCGCGACCGACGCGATGTTCCTGAGCGACGAGCAGGTCGTGAACCGCTGGGGCTTCGACTACTACGTGTTCAAGGCCCTCGGCGCCTTCAGGGACGGAGACTACGCGGCCTTCGAGCACTTCACGCGGGTCGTCGAGAGTCTGGTGCTCAGGCCCGTGGACGGACGCGGCGACATGAGTCAGCTGCGCTTCATGCAGTTCCTGTCCCGGATCAACAACGGAGACAGGCTCGATCTGATGTTCGAGGAGCCCCAGACCCCTCTGGAGTCGGCCCTCAGCGTCCTGGAGACCATCTGCAGGGACATGAGCGTCCCCCAGAGACAGCAGGAGCAGGTGCGGCACGCCATCGTCGAGacgCTGGTCGTGGTGTGTATCCGCAGCGGAGAGTTTGAGAAAGCTGAGGAGCTGCTGCTGAGACTCTTCAGTGACTCCAACGATTCAGCAGGAAGAaggaAGCTGCTGATGAATCTGATTCGTCGTCGTCGTTCTTCTCACTCGGTTCTTCAGCTCAGCTCGTTCAGTGACTTCAAGCAGGACATGCTGGACTTCCTGGAGCAGCTGTACCGTGTCCCGGGCCCTTCCTGCTGCAGGTGCCGCGCCCTACGCTCGCCCTCAGACCATCCTCAGAGTGTCTGCtcttcactgtgtgtgtgtgtgtgtgtgtgtgtgtgcagatgcggtgTGTGTGCGGCTCGTCTCAGTCTCGCGGGCGCTGCAGCGGGTGTACTGGCGTGCTCCGAGCGCTACGCTGTGAGCGTCTCCTTCACGCAGCTGCAGCGGGAGCTGGAGGACGAGAGCCAGGAGCCCGGAGGGCCCACGCCGGACAGACGCAGACAGAAGAGGATGGTCCTGTCCAGTGAAGAGGAGTCTGAGGAGTCCAgcagacacagacagaagaagaagaagcgaTCACAGCTCGTCTCCAGCTTCACAGACACACCACCGACACAGCTCTCCGTCCGGAGGAACTCACAGCaggaaggccCGGTGGGAGGAAGTGTCGGGATGCAGGAGAACTGGAGCGATGAGGAGTCACTGTTCGGCTCCTCTTCAGgccgCTCCAGCAGGAAGTGCAGCAGgaagatgtgGACGCTGCAGGAGTCGGAGTGGCTGAAGGAGGCGTGCAGCGTTGCGGGAGTGGGACACTGGGAGAAGATCCGCTCGTCCTTCCCCTTCGCGGGCCTTACGGCGGTCAACCTGAAGGACCGCTGGAGGACCATGCTGAAGCTCAGGCtggtctgacacacacacacacacacacacacacgttttatcatgtttttaggCCTTGTGTTCCTCATTAAACACtggttcattcattcattccctGAAAGTGTGTTCTTGATGTTCGAGGAGCTCCTG

Function

GO:

id name namespace
GO:0000723 telomere maintenance biological_process
GO:0000783 nuclear telomere cap complex cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46010 lncRNA downstream 550 24305255 ~ 24312292 (-) True G31127
TU45956 lncRNA downstream 53380 24251456 ~ 24259462 (-) False G31109
TU45957 lncRNA downstream 53380 24251705 ~ 24259462 (-) False G31109
XR_006250687.1 lncRNA downstream 97270 24212067 ~ 24215572 (-) False LOC122343167
XR_006250686.1 lncRNA downstream 97270 24212067 ~ 24215572 (-) True LOC122343167
TU46029 lncRNA upstream 12765 24331877 ~ 24332563 (-) True G31142
TU46039 lncRNA upstream 105815 24424927 ~ 24433401 (-) True G31152
TU46040 lncRNA upstream 105815 24424927 ~ 24433401 (-) False G31152
XR_006250677.1 lncRNA upstream 126417 24445529 ~ 24448290 (-) True LOC122343161
TU46005 lncRNA upstream 134349 24453461 ~ 24464894 (-) True G31124
XM_043237510.1 mRNA downstream 46235 24265349 ~ 24266607 (-) True LOC122343156
XM_043237254.1 mRNA downstream 92834 24207655 ~ 24220008 (-) True LOC122342994
XM_043237481.1 mRNA downstream 383308 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 383308 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 584924 23725752 ~ 23727918 (-) True LOC122343107
XM_043236128.1 mRNA upstream 6276 24325388 ~ 24327263 (-) True LOC122342340
XM_043237349.1 mRNA upstream 157884 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 166250 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA upstream 167322 24486434 ~ 24491446 (-) False LOC122343108
XM_043236131.1 mRNA upstream 223026 24542138 ~ 24544170 (-) True LOC122342346
TU45934 other downstream 202169 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 541074 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 766473 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 875827 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 2096372 22216035 ~ 22216470 (-) True G30457
TU46025 other upstream 4858 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other upstream 6672 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other upstream 7683 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 439888 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 1032877 25351989 ~ 25352153 (-) True LOC122343864

Expression Profile