RNA id: XM_043236131.1



Basic Information


Item Value
RNA id XM_043236131.1
length 945
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC122342346
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24542138 ~ 24544170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTTGGCCCGTCACAGTGTTCTCATGGTTGTGGTCTTTGGGATGGTGTTGAGCGGgctCATTTACCTGAACAACATCCAGTGCAGGTTGGTGTACAAGCAGCCGGACGTGTTGGCAGGtcGTACGGATGTTGCGTCGGTGTCACCGTGGTCCGCTCCAATCATCTGGGAGGGAAACTTTGACTCGGCGCTGATCGACTCTATCTACAAACAACACAATctcaccatagcaaccacagtCTTCGCTATGGGAAAATACACGCGTTTTGTCAAAGATTTTCTGGAGTCAGCGGAGGAACATTACTTCGTCGGATTTCGAGTGCATTTCTACCTGTTTACGGATCAGCCAGAATCGGTTCCTGAGGTGAAGATGGGTGAAAACCGTACTCTGACAATTCAGAAGGTTCCGGTTTTGAACCGATGGCAGGACATCAGTATGAGCAGGATGGAAAAACTGGAAAAACTGATAGAGACTGAACTAGCCTCCAAGGCGGACTACATTTTTTGCCTTGACGTAGATACAAAGTTCTACGGGCGCTGGGGTGCGGAGACCTTGGGTCGTCTGGTAGGTGTGATACATCCTTATCTCTATAATGTTCCAAGGAATCAGTTCACCTACGAGCGCAGACCAGCGTCTAAAGCTTACATTGCCGCTGAAGAAggtgattattattatgccGGTGCTGCATTTGGTGGATCGTTGGAGGATGTGCATCATCTCACCAGAACCTGCAGAGAGCAGCTGAGCATCGACGCCGCGAACTCCATTGAGGCCGTATGGCAAGAGGAGTCTCACTTGAACAAGTATTTCCTTTTGAACAAACCCAGTAAACTGCTCTCTCCTGAGTATATGTGGCGGGGCATCAGTGAACAAGCAGCCCCGATAAAGATCGTTCGCTTCACTAATGTACCTAAAAACTATGCTGAAATTCGCCCGAACCCGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45970 lncRNA downstream 1799 24298780 ~ 24540339 (-) False G31115
TU45968 lncRNA downstream 39963 24298780 ~ 24502175 (-) False G31115
TU45967 lncRNA downstream 39963 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 75582 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA downstream 75582 24465363 ~ 24466556 (-) False G31155
TU46065 lncRNA upstream 9248 24553418 ~ 24683082 (-) True G31165
TU46063 lncRNA upstream 9278 24553448 ~ 24683082 (-) False G31165
TU46084 lncRNA upstream 92091 24636261 ~ 24639737 (-) True G31179
TU46099 lncRNA upstream 123468 24667638 ~ 24669294 (-) True G31189
TU46102 lncRNA upstream 143358 24687528 ~ 24688132 (-) True G31192
XM_043237444.1 mRNA downstream 49639 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA downstream 50692 24486434 ~ 24491446 (-) False LOC122343108
XM_043237349.1 mRNA downstream 62224 24476996 ~ 24479914 (-) True ckap4
XM_043236128.1 mRNA downstream 214875 24325388 ~ 24327263 (-) True LOC122342340
XM_043236125.1 mRNA downstream 223026 24312842 ~ 24319112 (-) True LOC122342338
XM_043237262.1 mRNA upstream 13962 24558132 ~ 24564000 (-) True LOC122342998
XM_043237239.1 mRNA upstream 38797 24582967 ~ 24593953 (-) True LOC122342983
XM_043237376.1 mRNA upstream 82894 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA upstream 82894 24627064 ~ 24630716 (-) False LOC122343065
XM_043237377.1 mRNA upstream 82894 24627064 ~ 24630716 (-) True LOC122343065
TU46017 other downstream 44542 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 46960 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 214906 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 214906 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 214906 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 214830 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 807819 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 808229 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 809751 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 810167 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile