RNA id: XM_043236134.1



Basic Information


Item Value
RNA id XM_043236134.1
length 1026
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122342351
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25032134 ~ 25034674 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atgaaaatccagctgatCCCGAGCCAGCTGAAGcccgactccgattcagctgatccTCAGTCGGATCCAAACATTCTTGAACCTATGGCTCTGCAGCATTCAGCTGATCATCGgattcagctgatcttcttcCAGGCCCGTCAGCTCTTGAGCCAGTACTCCCAAAATTTCCAGCTGCTTGCAAGCATAGACGAATCAAGGATCAAACCCGAGCAGCCTGTTTCAGCCGTCCCAACTCCAGtaccatttgatgagatttatgaagTGGGAGATGAGCTTGGACAAGGAGGCTTTGGCACTGTGTACGAGGGGACTTCAAAAAATCAACGCAAGAAGgttGCTATCAAAATCATCCTCAAGTGTGAAAGAGACCGTTATATTGAACTAcctggctgttcaaagccactgtttgcagaagtggctgcAAACCTGCTGCTGAAACAGGCTCCATTAAGCCCCTACATTGTGTACATGCTGGAATggtttgaagaggaggatcggttcatcctcatcctggaaCATCCGGAACCCTGCAAGGACTTGCTCAAATTTGTGGTTAACAACATGCATTGGGCGAACGAATTACAGACACGTAGCCTGATGTATCAAGCGGTGCTCGGGGCCAAGCACTGTCTTGACCGAGGTGTCTTTCACCGGGACATTAAGTTGAATAACTTTCTGATCAACACGACGACTAACCGAGTCcaactaatagactttggctgcagTGACCTCGTCAAAAGTACAGGCTACTTGGGTGGTTTTATAGGAGGAGTCTGCCCGCCTGAATACTACAACGACTTAAGATACAAGGCAGAGCCAACAACCGTCTGGTCTCTGGGTGTAATGATGTACACAATGATGTGCAAATGTCGACCCTTTAGAagtcctgaagacatgatgcatggcagtctgagttttaacgttagagtatccacagaattgcagaacttgataagtcgctgcctgactgttgacccaactaagagagcgactattgaggagatcctacagcataaatggttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46133 lncRNA downstream 48805 24983088 ~ 24983329 (-) True G31222
TU46132 lncRNA downstream 49445 24982326 ~ 24982689 (-) True G31221
TU46112 lncRNA downstream 317357 24714452 ~ 24714777 (-) True G31201
TU46111 lncRNA downstream 320340 24711587 ~ 24711794 (-) True G31200
TU46110 lncRNA downstream 320709 24710784 ~ 24711425 (-) True G31199
TU46136 lncRNA upstream 147339 25182013 ~ 25182344 (-) True G31225
TU46140 lncRNA upstream 280516 25315190 ~ 25315569 (-) True G31229
TU46148 lncRNA upstream 313700 25348374 ~ 25348645 (-) True G31237
TU46172 lncRNA upstream 401432 25436106 ~ 25437120 (-) True G31250
TU46175 lncRNA upstream 428479 25463153 ~ 25463544 (-) True G31253
XM_043236132.1 mRNA downstream 50511 24963974 ~ 24981623 (-) True LOC122342349
XM_043236177.1 mRNA downstream 272827 24754056 ~ 24759307 (-) True LOC122342407
XM_043237379.1 mRNA downstream 401418 24627064 ~ 24630716 (-) False LOC122343065
XM_043236135.1 mRNA upstream 452514 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 520110 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA upstream 520110 25554784 ~ 25567493 (-) True irf10
XM_043236421.1 mRNA upstream 575941 25610615 ~ 25625124 (-) True samhd1
XM_043236423.1 mRNA upstream 591933 25626607 ~ 25629375 (-) True mtg2
TU46123 other downstream 271348 24759000 ~ 24760786 (-) False LOC122342407
TU45989 other downstream 536956 24306501 ~ 24495178 (-) True G31120
XR_006250852.1 other upstream 317315 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 317725 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 319247 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 319663 25354337 ~ 25354527 (-) True LOC122343873
XR_006250856.1 other upstream 321254 25355928 ~ 25356088 (-) True LOC122343868

Expression Profile