RNA id: XM_043236159.1


Basic Information

Item Value
RNA id XM_043236159.1
length 4893
RNA type mRNA
GC content 0.47
exon number 4
gene id kcnc2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 136003 ~ 171334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagagcgcgcgaGAAAGAAAGCGAGCGTGCTCTTGTTGCTCCGAAGCGCGAGCCGcaggtgatgatgatgaggatgaggatgaggatgggtCGATAGAAGGAAGAGCTACTGCTTTCTTTCACCTgtccgcgcgcgcgcgctcggcTCGTCTCGCTCGCCGCGAACAAAGCGAAGCGTTCGGCTCAACCCATCACTTCAATGAGGCTGTTCGGGAACTATTGGAGTACTCCAGCTTCGCCACAGCAGCACCGTAGAGTAACGTTACTCCCCTCGCGTCATGTCTCACTCTGAGAGATGGGCAAGTTCGACGAGCACGAGAGGGTGATCCTCAACGTCGGGGGCACGAGGCACGAAACCTACCGGACCACGTTAAAGACCCTGCCGGGCACGCGCTTGGCCCTGCTCGCCTCCGAGTCGGACCTCGAGTCGGTTCTGGGCCAGCTGCAACAAGTCCCGGGCTTCATCGAGTACAACGCGCGCAGCAACGAGTATTTCTTTGACCGGCACCCAGGCGTCTTTGCCTACGTGCTCAACTATTACCGGACAGGTAAGCTGCACTGCCCGGCGGACGTGTGCGGACCTCTGTTCGAGGAGGAGCTGTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGGGATGCCGAGGAGGCGCTCGAGGTGTTCGAGATGAACGTGGACAACGATGAGGACGACGAGTACGGCAAGCGGCTGGGCATCGAGGACGTGGTGTCCGCGGACGGTACCGGCAGCAGGTGGAGGAAGTGGCAGCCGGTCATCTGGAACCTGTTCGAGGACCCGTACTCCTCCAGAGCCGCTCGGTTCATCGCTTTCGCCTCCCTGTTCTTCATCCTGGTCTCCATAACCACCTTCTGCTTGGAGACGCACGAGGCCTTCAACACGGTCATCAACAAGACGGACTCCTTCCGCAACGACTCGTTCACGGACTTCAGCCAGCAGTACGAGATCGAGACGGACCCGGCGCTCACCTACGTGGAGGGCGTCTGCGTGCTGTGGTTCACCTTTGAGTTCCTGGTGCGCGTCACCTTCAGCCCGGACAAGCTGGAGTTCGTCAAGAGCATCCTGAACATCATAGACTTCGTGGCCATTCTGCCCTTTTACCTGGAGGTGGGCTTGAGCGGGCTCTCCTCCAAAGCCGCCAAAGACGTCCTGGGCTTCTTGCGCGTGGTCCGCTTCGTGCGTATCTTGAGGATCTTCAAGCTGACGCGGCACTTCGTGGGCCTGCGCGTGTTGGGACACACCCTGCGGGCGAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTCGCGCTGGGCGTCCTCATCTTCGCCACCATGATCTACTACGCCGAGCGGATCGGGGCCAGCCCCAACGACCCGACGGCCAGCCACCACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGCTACGGAGACATGTACCCTCAGACGTGGTCGGGCATGGTGGTGGGCGCGCTCTGCGCCCTCGCCGGAGTCCTGACCATAGCTATGCCCGTGCCCGTCATCGTCAACAACTTCGGCATGTACTACTCGCTCGCCATGGCCAAGCAGAAGCTGCCTAAGAAGAGGAAGAAGCACATCCCTCAGGCGGTGCAGACCGGATCGCCGTCCTACTGCAAGACGGACCTGAGCACGGCCTGCAACAGCACTCAGGGCGAGCTGTGTTTGGGTCAGAGCCGAGGACTGGAGCGCCACCGCTCAGTGCTGTCTGCCGACTGCAGcgcaggaagtgacatcaccaTGTCTCCGGAGGAGCGGATCCCGATGCGACTGTCCAGCGCTCGAGAACAGGACCGTCACACCGAAGGCACCTGCTTCCTGCTGGCCGCCAGCGACTACACCTGCTCGGCAGACGCAGCCATCCGCAAAACAGCTACTGTATCACCTCTGGCTGACGTACAGTTTATATCGGCCAGAGACGGGGAAGGCGGGGCCAGCAGAGACTCAGATGGATTTGATGAATTGGATTGGACGGTCTGGAATAGAATAAGCCTGTGATTGGACGGTTCTGAAGCGGACTCTCTGTGAACAGAAACCTCACTTGAACTGCTCACGACCTGTGGATTTtcccgcttttttttttttttttttttttcggtgtGGATAAAGACTGAAGCCAGTCGGCACAAAAAAAACCACGATATGGATAGTGAAACTTTTCCTGCTTAAAACGAGTTGGCTCTCCGTTTAATGTTGCATCTGTATAAAGGACACACATCCACCTGTGGCTTCCCCTCTGTGTCAGGTAGCAAATCAAACACCCCTCGAACCCCTTCCAAGGCCTCTGTCGTTGCAATAAGTGTATTAAGATGTGTAGAGGCAcaagtgtttaaaaatgaagtatTAGTGTATCGAATATACTAAACAGAGTAGAGAGAGAGTAAACATGataagtttaataaatgtgacCTTCAGTcgtttatgctttttatttgctCTAGTATCTCTGGTGGATTCATTgttgtctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtatgtgggATGTTGTTCTCAAATGgcacatttaaaggaatagttcagccagaAATGAACTTTTACCCATCCAaggtgtagatgagtttgtgtcTTCATCAGAGCATTCCCTCActttcctctgcagtgaatgggtgccgtcagaacgagggtccaaacagctgataatccacaccactccagtcaaCCAGTTAACAGCTCGTGGCATTTTACCTTCAAATCAAGACAGGAGATGGGCCTTTTCATGAGCGGAATTGTTGTGGATGacatatttaaagtaatgtttatAGAATGTAATGGACTCATATGCATTCTTATAGCGTTGAACAACATTCTCAGAGCGTCCTTGTAATGTAACTTACACTCGATGAACGTTTTTGTAACTTTGAAACAACGTTATAATTGTAACAAGAAAACTTGGACTTTTCTACGTTCTTAGAATATTACCATTAGACATTCAAACAACGTTACGAACatcttaagaaacatttttataaattacacaaaaaaaaagtgtttttataatcTTCAGCTGTTACCTTGATTTGGATTCGTATTTTTGGTCAAGAGTAAAAGTTCGAAGTTAAAGCTTGTGTCTTTTCCAGATCGCGATGTTTTTATCggctcgttctgacggcacccattcactgcagaggaaagtgatggaaaaatgcatttctccaaatctgacgaagaaacaaactcgtctaCATCTTAGATGGCCTAAGGGTtagaacattttcattaaaatttcattttgggctgAACTAGTGCTTTACAGACCTCATGAAATGGCTTCAaagcacattttgaaataatccCTCTGCTTTCATTTGCACAGCTGCGTTGATCTCAACTCTGCACCATTGGCCGAGTCCCACATCAAGCTAAAATATTTGAAGGAATTTTACCATTTAtacctaaaatgttttttaatgtgtgtatcttctaaaatgtttttttggtcagGTTTTATTGTAAATGAGCAGATAACGAAGCCACAAAACCTCGTCTTGAATGTCTTGCGGTCTTTGAATGTGTGTTGATTTTCGCAGTTCTCTTTCTCATCCCCGTTTCTTGGAAAATTCGCCCAGTGCAACAATCAGATGTGATGTGCAATAATGATGTGAAACAAAGCTGCACCGATTCACACTGTGATTTCAGTTCAGTCCGTGACAGACGCCGCAGCAGAGCCTCTGAAAACACAAGTGCGGCACGGACACTTTCGCTCTAATTAGAACCTTTCTTTTCCTTCAGCCATGGAGAGATTAGAGCTGTCAcattagagagtgtgtgtgcgagtgtgtgtgcgtgagtgtgtgtgcgcatgcaGGCATTTCATGAAACCCGTCAAGAACACGTCCAGGTCACGTTTCActgcaaaatcaaaagaaaacttGAATCAATTTGATTtagcataaagaaaatgaagcctaTTTTAGGATCGGTatttctgttttgcattttgacGTTGTATTTAATGTGCgcaattacaatattttttttgattattaaatgaAAGCAGCGCTAAAAGTCCTGAATATTATATAGGCTacgacaaaaaataaatatatagacagAGCACCAtacaaataagatttttttaaagaaagttctccaaggctgcatttatttgatcataaatacagaacaaattggaaatattattacaattaaaaaaataagaatatatggtaaaatgtgatttaataaaatagtcaCTATAACCTTATTGGTCAAAATTAGCATCATTTtctatatgcaatatatatacacacacatatatgttgGATTTTGGGTTAAATGCGGGCTAGACAAGTTCTtgacagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcccacCACCCACAGAACTTAAGAGGATAGTATTCTTCATGTTAATATTATCTGCTGCTTTAAGAAGTCAGGGCACCGTTTCaaatatatatgacaaaaatgtaaaggtatatatatatatatttttgaacttAGATCTTGTATTTTTGTGTCTCTTGATGAGTCTCATTGTCAGTCCCATGGTGTATCTGTATGTCCACTCTGTGCAGACTGTGAATCTGGggtgtttttatgtttcagtGATTGGAGTTTTGAACATGTATTGTGGAGTCATTTGTCGGCCTTTTGTAGTGCATGCAAAGACCCATGGTCAAAATGTAAAGACTGCGTCTGAAGAATATGTACAGTTCAATGCAATGTGAGACAGTCGGATAAACATATTaaccttgtaaaaaaaaacaaa

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04888 KCNC2, KV3.2; potassium voltage-gated channel Shaw-related subfamily C member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36788 lncRNA upstream 20062 191396 ~ 194159 (-) True G24713
TU36787 lncRNA upstream 34559 205893 ~ 208820 (-) True G24712
TU36801 lncRNA upstream 41271 212605 ~ 213099 (-) False G24724
TU36802 lncRNA upstream 41271 212605 ~ 213149 (-) False G24724
TU36803 lncRNA upstream 41271 212605 ~ 213246 (-) True G24724
XM_043237975.1 mRNA downstream 49393 75381 ~ 86610 (-) True cpsf6
XM_043236916.1 mRNA downstream 62322 47610 ~ 73681 (-) True si:dkey-97m3.1
XM_043237876.1 mRNA downstream 102076 19991 ~ 33927 (-) True LOC122343420
XM_043236794.1 mRNA upstream 5939 177273 ~ 184430 (-) True ccdc107
XM_043237773.1 mRNA upstream 28477 199811 ~ 205364 (-) False krr1
XM_043237772.1 mRNA upstream 28477 199811 ~ 205364 (-) True krr1
XM_043237830.1 mRNA upstream 78807 250141 ~ 252421 (-) True phlda1
XM_043236959.1 mRNA upstream 81932 253266 ~ 267765 (-) True nap1l1
TU36763 other downstream 62517 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 102087 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 124902 10833 ~ 11101 (-) True G24689
TU36783 other upstream 15126 186460 ~ 191242 (-) True G24708
TU36940 other upstream 737612 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 897826 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 1438026 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 1438026 1609360 ~ 1618298 (-) False zgc:113263

Expression Profile