RNA id: XM_043236168.1


Basic Information

Item Value
RNA id XM_043236168.1
length 3286
RNA type mRNA
GC content 0.49
exon number 21
gene id fbxo18
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4832410 ~ 4840605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaagtaacatcCGAACTTTTAATTTGTAGTGACGCAGAGCGGAAATAGAGCGCTTTtgaagttgtgtttgtttgggtGGTCTGAAGTTAAATCTGTGACATTCTTGAAGTGAAACGTCTCGTCGTTTGTAAATCATGGAATCGTCCATGAGAGGAAGGGCCAAACGCAGGCACTTGGGGCCCTCAGAATGTAACGACCTGGTGCAAAGCACGTCTCTCACACAGCCTTTCAATGTTAACCTCAGCCACACAGATCCAAACCGAGGACTTCAGCCGAGGACCCCCACCAAAAGAAGCAGACAagGTGGTGCGGGACAGCAGAAAGGCATCACCAGCTTCTTCTCCGTCACCGGAGTCATCAGCACCAGCCCCCAAAAAGGAACCAAGACTCCAGTGAAGGAGGAGGAACGGGAACCGATCGGTCATCTCATcccaaaagaagaaaatgaagaagaaaagatTGAGGACTATATGGAAGGCATCACCGAGGACATGTTTGATGATGCCTTTGAGGTAGGAACTGCATCTGTCAAAAAAGAAGAATCGTTGGAAGTTGCTGTGACAAaagaagaggatgaagaggacCTGGTTGAAGCCATCCCCGATGCCTGCTTTGGGCTTCTAGGAGTGCAGGGGGGCCAGGAGGTGCCCAAGGGCCATGTCCAGGATCTGCCCGAGGAGGTCCTGAGGCAAGTGTTTGCACACCTTCCAGCAGATGACCTCTATCACAACATCAGCTTGGTGTGCCATCACTGGAAGGATGTCGTCATGGACCCCCAGTTTCTGCCGTGGAAGAAGCTGTACTGCAGATACCGTAAGCAGCAAAATGAGGCGCTGAAGGAGGTGAAGTCTATCCTTGATGACAATCACATTAACAGAAAGGATGACCTGTGTCTTCTCAATATGCTGAGGTACATGTCTCGGTTCAAACACAGCAAACGTGTGAATGTGAAGGACGTGTTGGCGTGTGTGAAAGCGCATCAGCTCTACGCTCAGGCTGAAGCCTGTATCAGAGTCAGAATCCCGGACATGGTGGATGACGAGGGTCCAAACCCTTGGTCTGCCATGGCCCTGATGTTGGTTCTGGCTGATGGGGTGAAAGATGTCTTGGACCTGGTGGCTCTCTTGCAGAAGTCTGGGTGTCTGCTGACAGCGGGGGGAATCTCCGAGTACTTGTGGGCCGTAGCGACTTTGCTCCTGGCAATGAGAAAGAACAATATTAACATAAGCAACAGGTGGCATTACAATATCTTTTATGTGCTGCACTTAATGGAGAACGCTCCTCCTCCTGCGGGCTTACAAGACAAAAGACAGTTTCTGACTCATGAGCAGCAGCAGATACTTAACCATGACATCCAGAGTAACCACGTTGTTAAAATAATGGCTTTTGCTGGCACTGGAAAGACGAGCACGCTCGTAAAATATGCTCAGCGAAGGCCGCATATGCGCTTTCTCTACTTGGCCTTCAACAAATCTGTGGCCATGCAAGCTCAGCAGTCATTTCCAAACAACGTCGAATGCAGTACTATCCATTCAATGGCGTTCAGAGCTGTGGGAGTGAGGtataaaaacatgaagaaaCTGTCCAATAACTTGCAGGTGTTTAGCGTGGCGTGGGTCTTGCCTAAAGGACTCGGAGGATTTGTCAACGCTAAAGTGGTGACGCAAACGCTCCAGAATTACTGGGCATCTGTAGACCGGCGCATTGGCCCGGAACACGTTCCACAcgaatacaaaaacacaaatggaTTGCTAGAATGCCCAGACGATCACAAAAAAATGGCATTTGCTGATGCTGCACAGACGTTGTGGGACCAAATGGTAGAGCTGAAGTCCAGAAAAGAGAGAGCGTACAACATGACCCATGATGGATACCTCAAACTCTGGCAGCTGAGTAAACCACAGCTGGGCCGATATGATGCCATATTTATTGATGAAGCTCAAGACTGCACACCagtcgTCATGGGCATCATGCTCTCTCAGAACTGTGGGAAAATCCTGGTTGGAGATCCTCATCAACAGATTTACACTTTCAGAGGAGCAGTCAATGCTTTGCATGAAGTTCCTCACACACACGTCTATTATCTCACACAGAGCTTTAGGTTTGGATCTGAAATTGCGTATATTGGTGCTGCAGTACTAGACAGCTGTAAGAAAGTGAAGCAGATATTGGTTGGTGGGAATCAGGATGgaagtGTTCGAGGGGaggacacacaaacactgcagcACCTGAAGTTGGGACAGAGGCTGCCTGAAGGGAACGTAGCCATTCTGAGTCGCTGTAATGTCACAGTTTTCAGCGAGGCTGTCCGACTCACAGACGCCAACCCCACCTGCACAATCTACATTGTAGGAGGTGTTGAAAACTTTGGGCTGGACAAAATCATGGATCTCTGGGTCCTGATGCAACCAGAGGACAAACGCAAGAATGAGAGCCTCCAGATCAAGGATTACTTTATCCGTAGTTTCTGCAAAGATAAGATGGGTGGATTCAGAGGTCTGAAGGCGTACGCCACGGCCTCAGAAGACCGCGAGCTAGAGGGCAAGCTAGCCGTGGTGGAAAAATACAACAAACGCATTCCAGAGCTGGTTAAACGCATCTACGATCGCGCCCAGAGAAGAGCAGAGTGCGCAGATTTTATCCTTGGTACGGTGCATAAGGCCAAAGGCCTGGAGTTCGACACAGTCGCTGTGACAGATGACTTCACAAAAGTATCATGTGCTCGACACAACCTGCAGGGAGTGGGCAGCTTtaatgcagCTGCAGCAAACGTCCCAGATGATGAGTGGAACCTGTTATACGTGGCCATCACTCGAGCCAAAAGAGCACTGTACATCACCAAGACCATCAGCAACATCCTAACGTTCACTGGGGAGTACTTCCTGAGGTCAGGGCTGACCGGCACTCTGCTGGGTGAAGAATTGTTTCTTGCCTGTTCCACTGAAGGCTGTCAGAACCACATCACTGCAGACGCTGTCCTCAGCATGAGCAAACTCCCTGTCAGATATATGGAGAGCGAGGATGCGGCCGGCGTTCTGTGTTTGACCTGTGTGGAGCAGCGTGTGGGACCTGCAGCCTTCCTGCTCTCTCCACCTGAACGGGTCAGAACCATGAACTATACCAATGAAAGAATAGGTTTGCCCATCAACGTCGCCATGCTGCTGTCTTTACTTTAAATCCCACATTTAAGTGCTCTTTTGCCTCTGTGTCTTCTggagtgattttttttgcacagttcttaaactttttttttttttttttttttttttcccattttttttttttt

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10300 FBXO18; F-box protein, helicase, 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38607 lncRNA upstream 65612 4765864 ~ 4767821 (+) True G26008
TU38569 lncRNA upstream 89830 4730837 ~ 4743603 (+) True G25976
TU38575 lncRNA upstream 142650 4689375 ~ 4690783 (+) True G25981
TU38522 lncRNA upstream 397796 4432605 ~ 4435637 (+) True G25941
TU38521 lncRNA upstream 401475 4431623 ~ 4431958 (+) True G25940
TU38673 lncRNA downstream 140604 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 140604 4981209 ~ 4991489 (+) True G26043
XR_006250776.1 lncRNA downstream 142616 4983221 ~ 4985211 (+) True LOC122343429
XR_006250590.1 lncRNA downstream 145574 4986179 ~ 4988188 (+) True LOC122342533
XR_006250591.1 lncRNA downstream 148562 4989167 ~ 4991312 (+) True LOC122342534
XM_043237028.1 mRNA upstream 5781 4817048 ~ 4827652 (+) True adm2a
XM_043237894.1 mRNA upstream 404038 4415145 ~ 4429395 (+) True tspan12
XM_043236162.1 mRNA upstream 653116 4176998 ~ 4180317 (+) True tmem243b
XM_043237764.1 mRNA upstream 656823 4175425 ~ 4176610 (+) True meig1
XM_043237745.1 mRNA upstream 662744 4164737 ~ 4170689 (+) True hspa14
XM_043236549.1 mRNA downstream 1088 4841693 ~ 4847744 (+) True glt8d2
XM_043236550.1 mRNA downstream 2679 4843284 ~ 4847744 (+) False glt8d2
XM_043236546.1 mRNA downstream 13460 4854065 ~ 4861148 (+) True ttc41
XM_043236548.1 mRNA downstream 20723 4861328 ~ 4867182 (+) True parp12b
XM_043237910.1 mRNA downstream 27417 4868022 ~ 4888613 (+) True si:dkeyp-27e10.3
TU38543 other upstream 204534 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 204534 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 598189 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 602341 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 1094839 3737502 ~ 3738594 (+) True G25551
TU38659 other downstream 88866 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 95324 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 513727 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 558275 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 941339 5781944 ~ 5853381 (+) False LOC122342465

Expression Profile