RNA id: XM_043236172.1


Basic Information

Item Value
RNA id XM_043236172.1
length 2483
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122342400
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3521694 ~ 3526313 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGTGTGTTACGATGGCTGGGATTTGTTAGACGCCAATGTCGTGTGTAGGGAATTGGGATGTGGGGAAGCGAAAGAGGTAAAGTTAGCCGATTATTTTGGGGAAAGTCCAGAACAAATATTGTTGACTAAGGTGAAATGTTTTGGGAATGAGTCGTCGCTGTCAGAATGTCCAGTGGGTGGAGGAAACAAATGGGATGTAATGGAGTGCCTACATGACTTGTATGCTGGAGTCATCTGTCAGCGTGAGTACAAAGCCTTTTACAGAATATTTAACTACATATCATGTGTTCAGAGTTGACATGTTATTTTCTTGTCTGTCTTATCAGCCAGAACCAGGCTGGTGGGTGGCATCAACTCTTGTTCTGGACGGGTGGAGGTTCTTTACAATGGAACATGGGGAACCGTGTGTGATGATGACTGGGATCTGTCTCAAGCTGCAGTGGTGTGTAGAGAGGTGGGCTGTGGGGGTGTTATTGAGGCAAagagtttttcttattttggaCAAGTTTCAGGACAAATATGGATGGATGGTGTATACTGTTTTGGAAATGAGTATGCATTGAGCAAATGTGAACACTATGAATGGGGAGTAAATGACTGCGATCATTCAGAGGATGTTGGAGTCGTCTGTCAGCCTGTTTTAAGGCTGGCAGAAGGCATTGATGCTTGTTCTGGAAGAGTGGAGGTTTTCCACAATGGACAATGGGGAACCGTGTGTGATGATGACTGGGGTGTATCAGATGGAGCAGTGGTATGTAAAGAGATGGGCTGTGGGAACATTAAAGTAATAACATTTGGTGCTTATTTTGGAGCTACATCAGGACAAGTATGGATGAACAATGTGAACTGCACTGGAGAAGAGGCAGCTTTGAGCACCTGTGCGTTTCAGGGATGGAGAACTCAATGTTCTTTTGCCAGTCATGCCGGAGTCATGTGTGGCCTCCCTGTCAGGCTGGTTCATGGTAATAGTCTTTGTTCTGGACGAGTGGAGGTTCTTCATGACGGTCAGTGGGGAACCGTGTCAGATGATGGCTGGAATCTAACAGACGCTGCAGTGGTTTGCAGAGAACTGGGCTGTGGAGATGTTATAGAGGTGAAAGGTGGTGCTTATTTTGGACAGGGATCTGGTCCAGTATGGATGGATTCTGTTGATTGTTCTGGAAATGAGTCTTCACTAATAGAGTGTAACATAGATCACTGGCAGCACTACAGCCTTGATCACCTGCATGATGCTGGAGTCATTTGTAGTGAGTCCTTTTCCACATCTGGAGAGCCTGTCCAGCGCTCAGATACAAGAGTTAGGGTCCTGTTGAGGATTGAGGTGCAGACCGACCCCATGTTTGACCCAAATGATCCCAGGACCATGAGTAAACTCTCAGAGGAGATTGAGAAGAAGCTGTACATTAGCAGACCGTTCTCTCTGACTTGGAAAACTCAAAAAGATGGAGAAGTCTTCCAGGAAGTTTCCCAGAAAAAAAAGCCAGCAAGAAAATGTAACTGACAtactgaataatttatttttgttttaatgaaattgtaattttaatgagattaaaactgttaaacatgtaaatgaattccctattaaataaataaaatgtaataccataatattttaatatataatgcatacacttaattatttttagcaCAAATTTCTTACAGTGTAGTTGAATGTGTCCTATTCACTCAAGCTATGTAATTAGCAATATTAAACAAGCAATGAAgtcattaaaatatcaaagGATGTCAGTGTTATgctctgtatatttttttataatcatgttgtgttgttttgagATGAATTAGTTGTCATTTGTTTGTAACCAAAAGCCATCTTTTAGGCAAATTGCAAAAGGGAAAATTTACATTTGGTACATTATCTTGTCCACATAACCAGTGCTTGGTAATGCTCTTCGCACACTTTCTTACGAccaacatataaaatataattaccatttttaccatatttataCCAATTACCATATTTTAGATTGTTCTAAAGTTTTGTCCTTTTCTAGAGGGACACAGTTttgaaccaaaaataaattaaatgctttattttggctTGGGcagataaaaatgtgtaataaaaataagtgtgtTAATGTAATACTGATGTATTGCTGTATAatgtattgtgatttttttactcAGCTTAGTGATCTAAGATATTATTTCTGCTAAAATGCGAAATTTTTATATTGtcacagtaacttttttttcgTCGCTAAAAATGATTTTCCTTTTAATGCGCATCACTTCCTCTCCGCTCCACAAGGCGGCGCACCCGGGCTTTCATTCAGCTTGACTTCCTCGGCTGCTTGATGACGGGCACAGCAGCGACAACACGAGCTGCTCCTGCAGAttattttggtgttaaaatgtctttttaacagCACATATTTCAGCTCAATTGCATACAAAACTGAAACGAAGTCACCTAACAAGCGCTGATCTGAAGATTGTAAAGCTGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250584.1 lncRNA downstream 76803 3442422 ~ 3444891 (-) False LOC122342503
XR_006250583.1 lncRNA downstream 77010 3442422 ~ 3444684 (-) True LOC122342503
XR_006250642.1 lncRNA downstream 103777 3416587 ~ 3417917 (-) True LOC122342757
XR_006250643.1 lncRNA downstream 118192 3402824 ~ 3403502 (-) True LOC122342758
XR_006250572.1 lncRNA downstream 402144 3117479 ~ 3119550 (-) True LOC122342458
TU38181 lncRNA upstream 120750 3647063 ~ 3701306 (-) False G25706
TU38182 lncRNA upstream 165317 3691630 ~ 3701306 (-) False G25706
TU38180 lncRNA upstream 173069 3699382 ~ 3701306 (-) True G25706
TU38209 lncRNA upstream 181276 3707589 ~ 3707894 (-) True G25731
TU38211 lncRNA upstream 183711 3710024 ~ 3741805 (-) True G25732
XM_043236169.1 mRNA downstream 766 3518689 ~ 3520928 (-) True LOC122342398
XM_043236824.1 mRNA downstream 119353 3400380 ~ 3402341 (-) True LOC122342755
XM_043236825.1 mRNA downstream 165553 3354369 ~ 3356141 (-) True LOC122342759
XM_043236381.1 mRNA downstream 427289 3027071 ~ 3094405 (-) True wnk1b
XM_043237574.1 mRNA downstream 496869 3024248 ~ 3024825 (-) True LOC122343240
XM_043236171.1 mRNA upstream 1722 3528035 ~ 3531141 (-) False LOC122342399
XM_043236170.1 mRNA upstream 1722 3528035 ~ 3531141 (-) True LOC122342399
XM_043236951.1 mRNA upstream 4901 3531214 ~ 3532749 (-) True LOC122342818
XM_043236952.1 mRNA upstream 8349 3534662 ~ 3577123 (-) True LOC122342819
XM_043236954.1 mRNA upstream 74692 3601005 ~ 3601991 (-) True LOC122342822
TU38086 other downstream 500237 3021062 ~ 3021457 (-) False LOC122342805
XR_006250644.1 other downstream 1145978 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 1145978 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 1433115 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1619127 1901843 ~ 1902567 (-) False rsph9
TU38175 other upstream 8524 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 21913 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 74687 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 76045 3602358 ~ 3604270 (-) False LOC122342823
TU38442 other upstream 738613 4264926 ~ 4267495 (-) True G25880

Expression Profile