RNA id: XM_043236173.1


Basic Information

Item Value
RNA id XM_043236173.1
length 3380
RNA type mRNA
GC content 0.42
exon number 2
gene id ntf3
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1504044 ~ 1519640 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgcgCGCTGTACTCGCCATTAAGACTCTGAGCACGCAACGCGCGCTTTCTATCTGGAAACTTTCAAAAAGGATTCGTTTTAAACTCATCACCTTCATGTCGGCACTGCTGAATATTTCCTCACCGATGCTATGGTTACCTTTATTACGATCTTACAGGTGAATCTAGTGATGTCCATCTTGCTGTACGTGATGTTTCTCGCGTACCTCTATGGTATCTCAGCCTCTACGATGGACAAGCAGCGGCCCACCCAGGACCCCATCAACACACTTATCATAAAGCTCCTTCAGGCCGACATCAGCCGTAGCCGACAGAAGCAGGGTGATGTGCTCCCTTCATCCACCTTAAACCCACCCGCAGTAACCGACTACAAGGAAAACGTCAGTGACCGGCCCGTGACAGACATCTCCACAGAGCTTCTGCGTCAGCACAAACGTTATAACTCGCCTCGCGTGCTTCTCAGCGACCGACCTCCTCTGCAACCGCCACCGCTCTACCTCATGGACGACTTCGTCAGCAGCCAGGACGGCAGTGGCACCAACAAGACGCGGCAAAAACGCAACACCGAGCACAAGAGTTACAGGGGCGAGTTTTCAGTGTGTGACAGCATCAGCCTGTGGGTAACGGACAGGACCACAGCTGTGGACATTAAGGGGCAGGTGGTCAAGATTTTGGGGTCTGTCAATGCAGGACGCACGAACATCAAGCAGTACTTTTACGAGACGAGATGTGACACCGGCAAGTCCCAGAAAGGCAGCTGTCGGGGCATTGACGAGAAGCACTGGAACTCGCAGTGCAAAACCTCGCAGACTTTTGTGCGTGCTCTCACTCAGGATGCATCATCGGTGGGATGGCGCTGGATACGTATAGACACCTCGTGCGTCTGTGCACTTTCGCGCAAACACCGCAGGACGTGAAAAACACTACAGTGACTTTTTTATGTTCCCTGGTGGggctgtaaatatataaattattacttAAGTTATATGGAATGCATATAGTTTATACATGTCTATGTATACGGTATAAATATacgtgttatttatttaatttttttgcaaggaaaaatcgaaaaaaaaaaagtaaaaatacttgcGTTAACATGCAATGCCATTAAGCTACAGGAGCATTGCATGCTAAATTGTGCCTTGCTCACGTATCAGAGTCAGAGGACATGTCACTCCACTAGACCTAGACCTTGGGAACAGTTGCAATGGAAAACATAGATCACTCAATATCATATTAACTTCAGTATTGTTCATGAAAACCAGTTTTTCTACTGAAACGGGCTGCCAGTATATCCTCTTTGTGTCTGGGAAAACAAATCACAGTTGGGATGTTGTTGTATTTTGTACGGAACgtttaaacatacagtatatgtgtatcaaaactgcatgaaatacctaagaaatatatatttttctaagcACTCCTGTTAGTGGTTTAAAAATGCAGAGAGTCAGTCCTAGAATAACCAAAAAGTGACTGTTTAGTGTTCCACAATCTGGGCAGTATTTTGATTCTAGATGGCCTCCTGAAAGAGTTTAACATCATTTTAGAAATTGCCTTTAGCGCATTCCAACATAGCCGCAATAAAGCAGGAACGACAGCAACCAAGTATTAACTttgatgaaataatgaaaattatagCTCAGTAGCCCTGAAGAAGCTTCTCAGCAAATGGTGGAGCAAAGACTCCTCCCACTATCCATGCCAGTAGCCATCTTTTCTGAAACCCTGCCCAGCCTACCAGAAACCACCAGAAATAAGCTTACTGCACTTTTAGTCTCTTTTCGATCATCTGCCATGATCAGTAGCAACTTGACCACCTTAACGAGCAAAGCAGCACGCATAAGAGcagcatgtaaacaaaatgGGCCGTCGCTAATGACACTGTAGTCTTACACAGAGGTAAAGCTGCCTTAAGACGATGTGCATACGTACAGAGCTGGGATTTGAACACGTAATCTCCCCCTTAAGAGGGTTTCCCTCTTGTCAGACTCATCTTAGGAGATAAGCATTTCGCCGGTGCGCTACGGCTAAAAAAAGGCCTGCTGTATTTTCCCGCTGTACGTTTATATAAAGAGACTTGCTCAGTTGCTAGACACTAAGGTCAAGAGATTTCAGTAAGATATGTGATATGCAATGACTGACACAAAATGTGTTGGCCTCTACAAAAAATTAACATGTTTTGTACTCCttcacattaaatatgataCACCCATGACAACACGTTTGTCAGCAAAGCATATAGGCAGCCTTTGCGTTCATTTGTAGAGCATTTTAAAAGGCAAGGCAGTTGCGGCTGGGCGGTTGTTCAGGCTTATCTTTTGTTATGCATAACCCAGGTCACCTCTGATTGAACAAGTCATCCAAGTGTCCacaagaatgaaaaatatacCACCTACGTATCATATTTACCTTTGTAGCAGCATATAAAACTTGCAGGATAAGCCAGGATGGGGTCCAAACCCATTACTACATCGAATGAAGTGCCAATACTTCGTCCTCCAAGGTCCGAACATAAAGCTTTATTAGCATGAAATCGTATTATAATGAGGCTATAAAAAGAACagtataaaaaattgttttattgctttttaatgcTTCACGGTTTGTTGGATAAAGgcacttttaaacattttttttgtggtggaCGACTCTGTTCATGACCTGATATACTTGTATTGGATTAGAGGTTGTGAAACAGAGAAACGGCTCAGATTCGAAACAGAACTGCAGACCACCAAGGATACAACACACCTTTTTCAATCTCTGATTACGTCCCACTTCGATATGGCCCTCTGTGGAAAAACAGGATAAAAGCTGAACACAGGAACTCCATTTTCCAAGGATGCTGTTGGGAAATGGCCCACACAGTTGTCCAAATGCATTGCCTTTCCTGTAACACACATTATTACACTGGAACATGAGGATCCCTAAATGATTATGACTTCTTGGATGACATTCACTGAAACATTCCCGTGTATTTTATGCTGTCTGGAAAAGCCCTGCTGGTGTAATGCATACTGTGTAGGATTCTTGCTGCTTTAAACCACTACAACTGACCTTATAATGGACCAATGGCCATTGCTGAAACCCAAGGACAAGGAAACTTTTATGATGAAACAAAACTGTGCCAAAACACACCACACTCTATGTAAGGACtacatgctttttaataatattcagaCAAGAAAGTTATCTCTGGtatgacaaaaaattaaaaaaattgcaaggCAAATCCCTATTTTAGTAAAGAAGAAAGACTTGTTTGCTTGATGGTCATTGTTTAGTGAAGTAGTTTGTTTTGGCTGTACCCATAACccattgtttgtatttttttttaattttctttttttttttttgaaagagagACAT

Function

GO:

id name namespace
GO:0043069 negative regulation of programmed cell death biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0005165 neurotrophin receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04356 NTF3; neurotrophin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 172201 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 216971 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 254875 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 376664 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 570933 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 36752 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 150977 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 169338 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 264597 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 268991 1788631 ~ 1789276 (+) True G25030
XM_043236681.1 mRNA upstream 17367 1473753 ~ 1486677 (+) True tbc1d30
XM_043236682.1 mRNA upstream 17367 1473785 ~ 1486677 (+) False tbc1d30
XM_043236683.1 mRNA upstream 17367 1477821 ~ 1486677 (+) False tbc1d30
XM_043236684.1 mRNA upstream 17367 1477825 ~ 1486677 (+) False tbc1d30
XM_043236685.1 mRNA upstream 17367 1478699 ~ 1486677 (+) False tbc1d30
XM_043236528.1 mRNA downstream 1980 1521620 ~ 1526208 (+) True LOC122342591
XM_043237041.1 mRNA downstream 48624 1568264 ~ 1575414 (+) True cd9b
XM_043237042.1 mRNA downstream 50639 1570279 ~ 1575414 (+) False cd9b
XM_043236885.1 mRNA downstream 85149 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043236887.1 mRNA downstream 85149 1604789 ~ 1609142 (+) False si:dkey-14d8.1
TU37077 other upstream 212820 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 838514 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1129962 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1130220 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1208975 293235 ~ 295069 (+) True G24609
TU37269 other downstream 150872 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 264652 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1595868 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1599889 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1919491 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile