RNA id: XM_043236175.1


Basic Information

Item Value
RNA id XM_043236175.1
length 906
RNA type mRNA
GC content 0.48
exon number 6
gene id mrps18a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1896161 ~ 1898257 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCAGGAAGTGAGTGTCATACGGGGAGGAATCATGGCGGTGCGCTGCGTCCTGCGGTCCGTAAGGACAGCTCTGAGCGATCTCAGCAGCAAGGGTTTATTTCAGAGGACACCGGGTTTCTCGCAGCCCTCCTTTCTTGGGATCGCGCCTTGTCGCGGACTTAGACGAGTGGTGGAGAAGAAAGATGGCAAAACAACCGTTATAGAGGGTGTTATAGAGCCTATGGCTGAGCAACCACAGCCTCCCAACCCCACAGCTTCCTGTCCCATCTACAGATGGAACCTACAAAACAAGTACAACTACACCGACGTGCTGTTACTCAGTCAGTTCATTCGCTTAGACGGCGGGATGCTTCCTCGGCGCATTACAGGCCTCTGTGCTCAGGAACATACCAAGATAGCAATTTGTGTACAGATGGCCCATCGTGCTGGTCTCCTACCAGATCATAAACCCCCTTTACCCGAAGGCCGTGTACCAAAGCCTAAATCCAACCCACCTCTCAACCGGTATCTGACGCGTTACTCTGTGACATCTGTGAAGCCCATCTACAGGACTGGGCTAAAGTGGTGCAAGAAGAGAATGAGTGTAGGACATCCTGCCCTGAGAAACAACGTCAGATACAGTCCCAAACCACTGTACATAAAGCACTGATGGACAATCAAAACAGTGACTTTCATGGGACTGAGAGGATTGATGACAAAGGATTTGCACCTTTTTAATGGTTTTCGCTTCCTCTGGCACAAAGAAACCAAGAGAGAACCAGTGTGCATGAAACATCAAGACGCTTCAAAAATGTCACATCTAGAGCTGTGTGTTCAATCCTCCTTCCACCATGTGATTTAGACGAACGTTAAATTACGTTATCGCAAATGCAGATTTGCAAATAAAACGTTTAACTCACTTGCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02963 RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37306 lncRNA upstream 65193 1830678 ~ 1830968 (+) True G25086
TU37231 lncRNA upstream 106885 1788631 ~ 1789276 (+) True G25030
XR_006250569.1 lncRNA upstream 108927 1784237 ~ 1787234 (+) False LOC122342451
TU37284 lncRNA upstream 202772 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 223401 1670617 ~ 1672760 (+) False LOC122343488
XR_006250555.1 lncRNA downstream 1639 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 7573 1905830 ~ 1906106 (+) True G25192
TU37451 lncRNA downstream 8943 1907200 ~ 1908927 (+) True G25193
TU37517 lncRNA downstream 96051 1994308 ~ 1995523 (+) False lyrm5a
XR_006250654.1 lncRNA downstream 130539 2028796 ~ 2033049 (+) True LOC122342875
XM_043236337.1 mRNA upstream 71099 1823635 ~ 1825062 (+) True LOC122342504
XM_043236242.1 mRNA upstream 73411 1818023 ~ 1822750 (+) True mapk12b
XM_043237781.1 mRNA upstream 79683 1809292 ~ 1816478 (+) True mapk11
XM_043237778.1 mRNA upstream 87461 1805589 ~ 1808700 (+) True LOC122343360
XM_043237779.1 mRNA upstream 87461 1805830 ~ 1808700 (+) False LOC122343360
XM_043236186.1 mRNA downstream 42485 1940742 ~ 1945597 (+) True pou3f2a
XM_043236898.1 mRNA downstream 62605 1960862 ~ 1965535 (+) True ngs
XM_043236894.1 mRNA downstream 75017 1973274 ~ 1979290 (+) False si:ch73-352p4.8
XM_043236896.1 mRNA downstream 75435 1973692 ~ 1979290 (+) False si:ch73-352p4.8
XM_043236895.1 mRNA downstream 75448 1973705 ~ 1979290 (+) True si:ch73-352p4.8
TU37230 other upstream 108065 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 223202 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 604937 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1230631 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1522079 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1217251 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1221272 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1540874 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1542655 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1548801 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile