RNA id: XR_006250558.1


Basic Information

Item Value
RNA id XR_006250558.1
length 563
RNA type transcript
GC content 0.44
exon number 2
gene id LOC122342408
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24743848 ~ 24767552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGCTTTGTGAAATTTATTAACAATTCCTGCACCAGTTCTATTTGCATTCATCTAAAAATGAGTCTGAAATAGTGTTCTAAAGTAGTGTCGTTTCTTCCTTTTTAATATTGAACTGAGTTGGAACTTGTTTAATTTTGAAACTTACTGAATAGATTCTGTCTTTTACAGCCTCATTCTCAGTGTGTCTACACACTTTACATTTTTCCCGGCCTAGATCTAAAACTACACAACGTTACATTTTTCAGGACTACATGCAGAACGTCCACGGTAAAGAAATCGACTTGCTGCGGACGACGGTGAAGGTGCCTGGGAAGAGAGCGCCCAGAGCGGTGGCGACGGTCGCCCCTACAGCCAGCCCCAAAACCAACGGACTGACCAAAGACCGCAGCACTTTACAACTCGGCATCGGGGCCACAAATTTGCAGGTGTCCTGGGACAGGTGAGGGAGTGAGCGGATGCTGGTGGAGCTGCTCAGAGAAGACATTAAActccagagagacagagaatagattatttattaaccCTTCTCTGAAGAAAAGAGTGGAAAGTCTTCTCAGAGAC

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45676 lncRNA upstream 28850 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 70254 24672967 ~ 24673594 (+) False LOC122343086
TU45650 lncRNA upstream 105194 24636364 ~ 24638654 (+) True LOC122343159
XR_006250675.1 lncRNA upstream 105582 24636352 ~ 24638266 (+) False LOC122343159
TU45587 lncRNA upstream 256961 24456022 ~ 24486887 (+) True G30812
TU46134 lncRNA downstream 221315 24988867 ~ 24989274 (+) True G31223
TU46137 lncRNA downstream 546671 25314223 ~ 25314596 (+) True G31226
TU46139 lncRNA downstream 547627 25315179 ~ 25315553 (+) True G31228
TU46232 lncRNA downstream 912589 25680141 ~ 25685985 (+) True LOC122342771
TU46335 lncRNA downstream 1019828 25787380 ~ 25787901 (+) True G31380
XM_043237250.1 mRNA upstream 55868 24679922 ~ 24687980 (+) True LOC122342991
XM_043237405.1 mRNA upstream 69436 24672891 ~ 24674412 (+) True LOC122343086
XM_043237436.1 mRNA upstream 71697 24667706 ~ 24672151 (+) False LOC122343104
XM_043237437.1 mRNA upstream 71697 24667741 ~ 24672151 (+) True LOC122343104
XM_043237418.1 mRNA upstream 78272 24661884 ~ 24665576 (+) True LOC122343093
XM_043236193.1 mRNA downstream 3080 24770632 ~ 24782341 (+) True LOC122342420
XM_043236409.1 mRNA downstream 749844 25517396 ~ 25553833 (+) False zmp:0000000926
XM_043236415.1 mRNA downstream 749850 25517402 ~ 25553833 (+) False zmp:0000000926
XM_043236407.1 mRNA downstream 749854 25517406 ~ 25553833 (+) False zmp:0000000926
XM_043236414.1 mRNA downstream 749856 25517408 ~ 25553833 (+) False zmp:0000000926
TU45681 other upstream 15401 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 97277 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 105194 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 272981 24465454 ~ 24470867 (+) False LOC122343023
XR_006250669.1 other upstream 277448 24454325 ~ 24466400 (+) False LOC122343028
XR_006250648.1 other downstream 867490 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 867493 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 926250 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 1045079 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 1057559 25825111 ~ 25825192 (+) True trnas-uga

Expression Profile