RNA id: XM_043236180.1


Basic Information

Item Value
RNA id XM_043236180.1
length 1580
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122342410
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1115391 ~ 1120658 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaactgaaaataaagttaCTAATTAACTTCTTTTATCCAGAATCGATTTGCCTGTCATCACCTGCCCTCTATAAAATCACATATAAAAGTCTTTAGGTTCCTTCAGTACATTGTCAAATGAAATAGTCTTCTCACCAGATGCTGGTTTAAACACGTTGAACACGACTAAGATGTTCCTTCACGCGCTGCTCCTTCTCTGTGCTTTTCCTCCTTCGTCTGCTAAAGGACGGCTGAGAGAATTCCACATACTACACTATCGGAGTCTGATAAAGTCTGCCGTAGAAGAATGCACGAGAAACTACACTAACCTCGTCACGGTTTATGACCGAGAAGATGATATAGAACTCAGCACGCAGTTAGATAAACTGTTCAAACGTAATGTTATCGAAAGCCCTACCGGCTGGATTGGTGCATATTTAGGAAGATGCAGTAAAAAATGGTCAAACGGCGACGAGGTcaatgaaaatattacaaaaaatattaaaaaggattGTGCTAACGAATGCTGCGCTACAATGCTAACTAATGGAGATTGGTACCTTAACACATGCAATCTTAGCAAACCATTCCTGTGTTATGAACAAGAAGCTGGACGAGCATCATACAACTACGTGTACATCGACGTTAAAAAAACCTGGTTTGAAGCTCAGCTGTACTGCAGAGAGAAACACGTCGATTTAGTCAGTATCAGAAATGAGAAGGAAAACGAACAAGTGAAGATAAAACTACAAAAGACTTGCTGGATCGGCCTGCTGGAGGACGGTGTGAAATGGAGTGACGAAGGACAATCCGCTTACAGAAAATGGACAAATGAAGATCTGCCAAATAAAGGCCATGTTTACATGAGTGCATTTGCGAATTGGACAGTTGACATCCAAGAATCCAACAAATTCTATCCTATATGCTACAaAAGCTTCATTTACGTCAGTCCTGGTCACATGTCTTGGGAGAAGGCTCTGGATCACTGCAACACTCAAAACAATACAGCCGGGCTTCTGCGCATCGAGTCTGAGGACGATCAGATAGAAACAGAGCGAGAGCTAAAAAGACAGAAGATCTCGGGGCCGGTGTGGATCGGGCTTAGACAGAGTCGACTTTTCGGGTTCTGGATTTGGTCCAACGGGCTTCAGCTGGGACCCTGGACCAACTGGAAAGAAGGAAGCGCTCCAGAACATCAGATATCCGAGCACTGCGGGGCCATGGAGAAGGTGAACGGTCAATATAAATGGAGCGATAAAGACTGCAGATCTGCGTTTAGAGTTTTATGTGAGGGGAAATGACAGCACTGAACTAACGTCTTACTTTTGCTATGTGCTTTAGTTGATTTTTTTGCCCAATAATTCATTACCGCCGTTTCGGTTTGTCAAATAATTCAACAAACACTGTTTTCTatgcaagcaaacaaacacactggtttttttccccccaagtTTAACACAAAGTTAAGGACTGAATAGAGCAGCGAACTGGCATAAAATTCTATGCACTTCGGGATCAGATTTTATTCCTATTCAAAAAGCTACATGTAGAGATTGTATCAccgactgaaaaaaaaaattaaatagttaatgCATAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37000 lncRNA downstream 49794 1068340 ~ 1068899 (-) True G24874
TU36996 lncRNA downstream 149342 968474 ~ 969351 (-) True G24870
TU36989 lncRNA downstream 161344 953465 ~ 957349 (-) True G24863
TU36938 lncRNA downstream 185585 864684 ~ 933108 (-) False pik3cg
TU37028 lncRNA upstream 9690 1130346 ~ 1131512 (-) False LOC122343365
XR_006250762.1 lncRNA upstream 9878 1130534 ~ 1132035 (-) True LOC122343365
TU37063 lncRNA upstream 130276 1250932 ~ 1252579 (-) True G24917
TU37073 lncRNA upstream 164549 1285205 ~ 1285466 (-) True G24924
TU37075 lncRNA upstream 165903 1286559 ~ 1287065 (-) True G24926
XM_043236943.1 mRNA downstream 203594 908934 ~ 915099 (-) True pik3cg
XM_043236474.1 mRNA downstream 344132 727438 ~ 774561 (-) False plekha5
XM_043236477.1 mRNA downstream 344133 767718 ~ 774560 (-) False plekha5
XM_043236476.1 mRNA downstream 344133 767718 ~ 774560 (-) False plekha5
XM_043236473.1 mRNA downstream 445451 643448 ~ 673242 (-) False plekha5
XM_043236182.1 mRNA upstream 2011 1122667 ~ 1125124 (-) False LOC122342412
XM_043236184.1 mRNA upstream 2011 1122667 ~ 1125100 (-) False LOC122342412
XM_043236183.1 mRNA upstream 2011 1122667 ~ 1125062 (-) True LOC122342412
XM_043237857.1 mRNA upstream 152650 1273306 ~ 1277391 (-) True lmod2b
XM_043237858.1 mRNA upstream 157354 1278010 ~ 1281707 (-) True asb15b
TU37001 other downstream 48597 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 185585 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 927451 186460 ~ 191242 (-) True G24708
TU36763 other downstream 1045207 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 1084777 28072 ~ 33916 (-) False LOC122343420
XR_006250650.1 other upstream 488704 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 488704 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 532935 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 781187 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 922297 2042953 ~ 2088579 (-) True cald1a

Expression Profile