RNA id: XM_043236193.1


Basic Information

Item Value
RNA id XM_043236193.1
length 2924
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122342420
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24770632 ~ 24782341 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAATTTTCATTGGCATTTAGTGAATTTTTATCAAAAGTGCATATCAAAGTCTGAATTGGAAAATGCAGATAGATGTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagCTCAGACTGAGGACAATATGAAGACATCTGTCCCTGTTAGAGAGCTGCAAAATGTCTTGAAgactcacaaaaacaacatgaagatgaaggcaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATAAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTcaagagcaaaaaaacacaggacaaaccaatcaaatgcaatgatatatttactgaactAAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggcaGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAACGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGttatatacagaatataaacttgtgtttatttttgatggacttgatgagAGTCGACTGCCTTTGAATTTTGAAAGTGATACAATGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagattcctcCTCAGTATGTAGGTTTGTTCACAGAGGTGCAAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaataatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAGTATGATGAACAACAAGAAGGAGAATGTTCAGagcatttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAGGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGAGCATTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagcTTAAGTTTTTCTTTGAGAATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATGGCGTGACTTAACAGAGAGAGCCAttgaaaaagcaatgcaaagtaAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGCATTTCACTGGAATCCAGTCAAAATCTGCTCAAaggcctgatcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCCCACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAACTGAAAGATCATTCATTATATGAGGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCGTCTTCAATGTGCACAGTGTTGACCTCAGTACTGCTGATGTCAGAGAAAGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACATTCAGACTACAAGAGACTCATTCCAGCTGTGAGATGCTGTAGAAAAGCTCTATTTGAAAGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCTTCTGCTCTACAAACATCAAACCATCTGACAGAGCTgaacctgagtaacaatgatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTGTGAAAGTTTATCTTCAactttacaatcctcaaactctgtcctgagagagctgcacctgagtaacaatgacctgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtCTTGTGGGAGTTTGTCTTCAactttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtCTTGTGGGAGTTTGTCTTCAactttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttctttctgaaggactgaagagtccaaactctaGACTGAAGATACTGAGGTTGTCTGGCTGcatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccgggagattcaggagtgaagctgctctctgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45676 lncRNA upstream 55634 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 97038 24672967 ~ 24673594 (+) False LOC122343086
TU45650 lncRNA upstream 131978 24636364 ~ 24638654 (+) True LOC122343159
XR_006250675.1 lncRNA upstream 132366 24636352 ~ 24638266 (+) False LOC122343159
TU45587 lncRNA upstream 283745 24456022 ~ 24486887 (+) True G30812
TU46134 lncRNA downstream 206526 24988867 ~ 24989274 (+) True G31223
TU46137 lncRNA downstream 531882 25314223 ~ 25314596 (+) True G31226
TU46139 lncRNA downstream 532838 25315179 ~ 25315553 (+) True G31228
TU46232 lncRNA downstream 897800 25680141 ~ 25685985 (+) True LOC122342771
TU46335 lncRNA downstream 1005039 25787380 ~ 25787901 (+) True G31380
XM_043236178.1 mRNA upstream 3376 24743848 ~ 24767256 (+) True LOC122342408
XM_043236179.1 mRNA upstream 18239 24743848 ~ 24752393 (+) False LOC122342408
XM_043237250.1 mRNA upstream 82652 24679922 ~ 24687980 (+) True LOC122342991
XM_043237405.1 mRNA upstream 96220 24672891 ~ 24674412 (+) True LOC122343086
XM_043237436.1 mRNA upstream 98481 24667706 ~ 24672151 (+) False LOC122343104
XM_043236409.1 mRNA downstream 735055 25517396 ~ 25553833 (+) False zmp:0000000926
XM_043236415.1 mRNA downstream 735061 25517402 ~ 25553833 (+) False zmp:0000000926
XM_043236407.1 mRNA downstream 735065 25517406 ~ 25553833 (+) False zmp:0000000926
XM_043236414.1 mRNA downstream 735067 25517408 ~ 25553833 (+) False zmp:0000000926
XM_043236400.1 mRNA downstream 735190 25517531 ~ 25553833 (+) False zmp:0000000926
XR_006250558.1 other upstream 3080 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 42185 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 124061 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 131978 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 299765 24465454 ~ 24470867 (+) False LOC122343023
XR_006250648.1 other downstream 852701 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 852704 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 911461 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 1030290 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 1042770 25825111 ~ 25825192 (+) True trnas-uga

Expression Profile