RNA id: XM_043236196.1


Basic Information

Item Value
RNA id XM_043236196.1
length 3093
RNA type mRNA
GC content 0.41
exon number 7
gene id podxl
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5540289 ~ 5549648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGCTGCTGCGTCTCAGACCTGTCTCGAGATCGGCCGCACAGCACGTCACTCCAGGCGAGTCCGCGCATTCAATACATCACAATCCGCGCAGCCAAGGAAACCCAGCAAAACTTTGCCCCCCAAATCCCCGGACCCTCAGGGTGGGGTAGAGACTCCGAGAAGAGGCAGCTCAGACAAAAGCACTCCTCTTGgctttaagataaaaaaaaaaaaataccagctGCAAAAAGAAGTCCAGATACAAACTCAAGACGATAAGCGGAACCGATCGGCGTCTCCACATTTTCATGCAAAACTTTCCCTGAAGTCACTGAAAGAGCAGCGAGCATCAAACTGAGGGACTGAAAATGGCAATCTCGTGGACGCTCATTGTATTAGGTGCCCTCCTGCAAGGCATGCAGTGCAACGCTGATGATAGCACAACAACACCGTCTGTCGTTACAACAGTCTCCTCTAAACCCACCGTGTCTTCTAACTTACTAGGATCCATTACTGCCTCAGTGACGTCTCCTACACTCACCACTACACAGTCCACTGAAACTGCCACTACATTACAGACCTCTACAGCCAAATCTACTCTCACCACATTGGGGGCCACTAAAACTGCCCTCATATCCTCCTCAACAGATTCCAATACACCCACTGCTCCACTGACCACTACAATCACTCCATCGACTACGCCAACTTTATCAGTGACCAGTAAACCAACCTCACAAAATGGTCCTGGCACAACCCATATCACAACCATTCAACCCAAAACGTCCAACACAGTCACTACACTTACACCCTTCAACAGCAGTACTGAAAAATCAACTACAACTGACAATTCAACCGATCCCAAACAAGACAACACCAACGAAACTACACCTGCGACTGCTACATCTACAGAAGTCGTCACCACCCAGCTCTCGTCTAATCAGACAAACTCATCTTCTCCTACTGTTAACAAAATTTCTACATCACCAATCACAGTAACACCGGACTCTAAATCTACCACTTCTCAAAATCCCGATACAACAAAAGCACAAACTACAGCCTCAACCATACGACAAAATATTATGAGTAGCACCTCTACTCCCGAAAATGTCTTTAAGTATTCCTTTGAGCTAAACAGCACTGAGGCAAACGATGTCCTTCAAGCCTGCAAGTCGTTGGGTCAGAAGATGAAATTCAATTGCATGATAACTCATGACAACCGAATAACTGCAACAATAACAATAGCTGCTGACCAGAAAATACAGCCAAGAAACGAGCAGCATGACGGTGGAAATGCGGACAGCAAGGACACGATACCGGACACGTTGATCGCCATCTTGGCTTCTTGTGGCGCGTTGGTGCTCATTCTGTGCTGCTTTGCAGCATACTGCACTTATCATCGCAGATCCTACAGGAAGAACCAGCAACACCTGACGGAAGAGCTGCAGACAGTGGAGAACGGTTATCATGACAATCCCACACTGGAGGTGATGGAGGTCCAGCCGGAGATGCAAGAGAAGAAACTGACAATGAACGGGGAGTTTAACGACAGCTGGATCGTCCCCATAGACAACCTGCTGAAAGAAGACATACCTGATGAAGAAGACACACACTTGTAATGGCATCAGATGAATTGTCTGGAAAAAGAAACCTGCTGCTCTCATAACGGTAGATTGTGACCGGCCAGAATGTAGAGAAAGCAGAGATTGACAAAGACTATCAAATGACAGTGGTTTCATTTGGTGCCAGGGTGTATATGCTGTAATTAAGTAGTTGGATGTCAAGTATTTGCTAGAAATAGCAGAAAGGTTTTTAAGTTTTGTGTGTCACTGTGCTTGGGAAAGGGAAAATCTGTAAATGGAATGGCAATGTACAATCTGGGGTGTCTCTTTGCCTTAACTTTTCTTTAGCACACTTCAAAAGTAagtttttataaacaatatataagaAACATCAGGTAAATTAGCCCATTTATGACTTATAAATGATTTGGTCcaatcattttcagttttgaatgaaaaaattatttagattttgctTGTCATCTTGGAACGTTTTTCCCACTGCAATGCCTGTTGGGACGGCATTCTTTAAATGTGAAGCTGGCCAAAATAAGGCATTCATTTCACTGCCTTTGCATTATGATATTGTCAAGCAGGTTTAAGTTACACATGCTaattacttaaaggaatagttcacccaaaaatgaaaattgcatgATATTAGACTTAGGATGGCTTggggttaaataaaatatgccattaaaaactttgggtgaactattctacttttttttttttttttaacttacgTTGTGGAGCACTCAAAACGTTGTTTCTACCTGATAATAATGAGCATAAATTGTAATACTACAATAGAAATTTAACTTTCCCATGACTTAAGGCCCAGAAATCACATTTATCCAGTGGAAACCTTATGTCACTTCCTGAGCAGAATGTAATTATTGTTcttgtacattttgtttaattttacgCTTCTTCCataattagtttgttttctgtttaggAAAGATTAACACTCATTGGCAGCAAATTACACTTGGACCAATGGATAATTCATCCTGGTAAATTAGACTATGGGTCAAAAGTATGTGACCCCACGATTGGCAGATAACTTTTCATTATCTTCCATCTGCTCCACTTACGTCTCGTTGTTGTTAATCATGCCAATATAAAGGTTTTTGGTCTTGTCAACCTGCAACACTAAATCCAGCACAACTCATTTACATACTTAAAGTTAAGTTACAGGTATGAAATCATAACGTGTCATTGTCTTTAATCAGAAAGGTCACCTTTTTCTTTgagtgtgttttaatttaattgctttattGTTGATAATCACCAAaacaagttttgtttgttttttgtatttgcatgcaCTACACAATTTTCAATATAAGGGATTCACTGCTGTTTCAGGCTAGCTCTTGTTCTTCCACCAAAGTATTAAGGTTGAATTTATAGTTGTATTCTGTATTTGAAGTCAGTTTGCTGCTGTGCACAAACGACAGGGGTCTGATACACTGGAAGCTTCATCTCTGTCAGATTGGATGGGGATGGCCATGATTtcgaatataaaaatattttaaaaaga

Function

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250759.1 lncRNA downstream 20437 5487063 ~ 5519852 (-) False LOC122343358
TU39068 lncRNA downstream 20950 5519103 ~ 5519339 (-) False LOC122343358
TU39040 lncRNA downstream 30030 5509992 ~ 5510259 (-) True G26320
TU39039 lncRNA downstream 30522 5509304 ~ 5509767 (-) True G26319
TU39037 lncRNA downstream 31188 5508871 ~ 5509101 (-) True G26317
TU39085 lncRNA upstream 5494 5555142 ~ 5569372 (-) True G26359
TU39086 lncRNA upstream 5494 5555142 ~ 5557854 (-) False G26359
TU39090 lncRNA upstream 10124 5559772 ~ 5569372 (-) False G26359
TU39094 lncRNA upstream 10124 5559772 ~ 5569372 (-) False G26359
TU39091 lncRNA upstream 14333 5563981 ~ 5569372 (-) False G26359
XM_043237090.1 mRNA downstream 64107 5454172 ~ 5476182 (-) True net1
XM_043237091.1 mRNA downstream 79068 5454172 ~ 5461221 (-) False net1
XM_043237942.1 mRNA downstream 305233 5224238 ~ 5235056 (-) True prmt8b
XM_043237943.1 mRNA downstream 305236 5224238 ~ 5235053 (-) False prmt8b
XM_043236975.1 mRNA downstream 324127 5207074 ~ 5216162 (-) True LOC122342835
XM_043236799.1 mRNA upstream 26009 5575657 ~ 5578580 (-) True LOC122342741
XM_043236302.1 mRNA upstream 30854 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA upstream 30854 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA upstream 30854 5580502 ~ 5700740 (-) False btbd11a
XM_043237925.1 mRNA upstream 170768 5720416 ~ 5724961 (-) True si:dkey-222f8.3
unassigned_transcript_303 other downstream 775122 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 775349 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 782462 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1272794 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1936019 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 167398 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 169364 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 180370 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 180370 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 180370 5730018 ~ 5736946 (-) False G26408

Expression Profile