RNA id: XM_043236210.1


Basic Information

Item Value
RNA id XM_043236210.1
length 622
RNA type mRNA
GC content 0.52
exon number 6
gene id rps16
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11296296 ~ 11298238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacatacataatctTAGCAGCTTTAAGTGTCGTAAACACTCTATCGCGGATGCTTTTACGACAGCGCCCCTGCTTCTCCGCTCAGGAAACCCTTGTGCGGCCTCTCCGAATAGCGCTCGCGCACTGAAAGAACCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAAAAACAGCCACTGCTGTTGCCCACTGCAAGAGGGGAAATGGACTCATCAAAGTCAACGGAAGACCTCTTGAGATGATCGAGCCTGCCACTCTGCAGTACAAGCTGCTGGAGCCTCTTCTGCTGTTGGGCAAGGAGCGCTTTGCTGGCGTTGACATCAGAGTTCGCGTGAAGGGTGGTGGACACGTTGCACAGATTTACGCCATCCGTCAGGCCATCTCCAAAGCCCTGGTTGCCTATTACCAGAAATATGTGGATGAGGCCTCCAAGAAAGAGATCAAGGATATCTTGATTCAGTACGATAGGACCCTGCTGGTCGCCGATCCCCGCCGCTGCGAGTCCAAGAAGTTTGGTGGACCTGGAGCTCGCGCCCGCTACCAGAAGTCCTACCGTTAAAATCTCTCTGTACATTTTCGTATAATAAATCCGAGGGGGAAAACA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02960 RP-S16e, RPS16; small subunit ribosomal protein S16e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41464 lncRNA downstream 36813 11126502 ~ 11259483 (-) False G27974
TU41465 lncRNA downstream 36813 11151095 ~ 11259483 (-) True G27974
TU41466 lncRNA downstream 139552 11126502 ~ 11156744 (-) False G27974
XR_006250620.1 lncRNA downstream 363895 10930597 ~ 10932401 (-) True LOC122342624
TU41414 lncRNA downstream 576012 10714630 ~ 10720284 (-) True G27940
TU41512 lncRNA upstream 116862 11415100 ~ 11419364 (-) False ppfia2
TU41527 lncRNA upstream 123831 11422069 ~ 11422586 (-) False ppfia2
XR_006250738.1 lncRNA upstream 320212 11618450 ~ 11648423 (-) True LOC122343274
TU41543 lncRNA upstream 355234 11653472 ~ 11654940 (-) False kmt2e
TU41551 lncRNA upstream 387494 11685732 ~ 11688800 (-) True G28029
XM_043236772.1 mRNA downstream 20708 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236770.1 mRNA downstream 20708 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236771.1 mRNA downstream 20708 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236768.1 mRNA downstream 20708 11220536 ~ 11275588 (-) True ppp1r12a
XM_043236769.1 mRNA downstream 20709 11220536 ~ 11275587 (-) False ppp1r12a
XM_043237566.1 mRNA upstream 40103 11338341 ~ 11376262 (-) False lin7a
XM_043237567.1 mRNA upstream 40103 11338341 ~ 11376261 (-) True lin7a
XM_043237619.1 mRNA upstream 116482 11414720 ~ 11573766 (-) False ppfia2
XM_043237620.1 mRNA upstream 116482 11414720 ~ 11573766 (-) True ppfia2
XM_043237624.1 mRNA upstream 116482 11414720 ~ 11545812 (-) False ppfia2
XR_006250794.1 other downstream 932730 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 939091 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1996117 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 2286992 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 2355025 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 123831 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 128259 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 716393 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1183682 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1183864 12482102 ~ 12489156 (-) False cpm

Expression Profile