RNA id: XM_043236230.1


Basic Information

Item Value
RNA id XM_043236230.1
length 5262
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC122342440
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27665105 ~ 27711406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGAGCTCGCAAGCTACCGGGGTTCCCAGATAACGGGACTATCGTAACggacacacgcgcgcacacagaCGGATGGTGGTGGGACAGAGCCAAAGAGCCGAATTTCGCTCAACGGGTACCgtgttgttttcttttcgtTCAGTTTTAACATCTCGCGCACACGCGGCGTCGCTCCTTAATTTATTTATCGATTGATTGCGTTTTAATTACCGGCTCGCGAGTGGAAGCGAAAGGGGGAGCGCGTCGAGCCGCCGCGCAGCCTTGTTACGTACGCGATCATTTAAATATAGCAAGCGATCCTGTTATGTTTTCAacgcaaaattaaaatgctgcttGAAATGCGTGCAATGTGCGCGAGATAAACCACACCGTAGGAGAGCTAGAAACCAAATAATCCCTGTTAAACCTTCGCAAACCGATTTAAAGCCAGCAACCGCGACTTGATTGTAATGTAACCAAGTAGTTTTTGTACTAAAGCGAACGCGCTTTTGACCCgggatttgtttaaaaagcgaAACCAAAGTGGAACCGGATCGCGGCGCGCGCAAGGCCATTGTGACGTTTACCGGCCGCTCACCTGGTCTCGCGCGGGATACGCAAAACCCAGGAAACGTAATGACAGTTAAGACAACAAGtgagttttgaattttaaaaagtcaccGTTTCAGCCAACGGTCCGCTCGAACGCGTGTTTCTCAACCGTCCTGTTAGTTTCGAATTGTTGACGATTTAACTGATTTAACGGAAAGGCAAACGTTGAGtgaccacaaaaaaacaaacaaacaaacaaaaaaaaaacacttttaatatatgtttcGACGATATTGAAAGATCCCGACTATCCGTCTGTGTGTCAGTCCGAGATAGAGCATCCCTGAGGAAGAAGTAATGACTGAGAGGCACAAtaccaaaaatgtaaagataGCTTAAGAAATTTACATTTGAAACCAAATAGAAActaccaaaaaagaaaaaaagaaacgacCTCAAAACGCAGTCTACTTGACAAAATAAGCaaccaaagaaaaagaaactcaaGACAAACGCCAAATACAAGAGAGCATAGAAGAAAAGCCCAGACGACGACGGATCATGTTTGTTCCCTTGCCGGTGCCGTTGGTGTTTCAGAGAACCGCTCCTGATTTCAGCGCCTGGCGACTCAAGTCTCCGCTGCCTCTGCGCTCCGGTAACTCCGATATCAGGATGTCTAAAGCCGTGGAGGACGACAAGATGGGGACTGAGCTCCCAGTGGACAGTACAGACTCTGAGAGGAACAGTCCAGAGGCCAGCGATCAGACCCAGCCGATGAAAACAAGTCCTTTCTGCCTGTCTCCCGCACCCAGCAAcacaaagGTGAAAGCCGAGGAGGCCGCTGAGATGACCAGTGTTCAcgctcctccacctcctccagcTCAGCCGGCTCTGCCACACACACAACTCATGCTGGCAGGCAGTCAGCTCGCAGGGCTGGCCGCTCTCCTCCCTGCACAGCAGCAGCTGTTGTTGCAGCAGGCTCAAGCGCAGCTGTTAGCCGCAGCCGTGCAGCAGTCGAACGCCGCGCATGCCGCCCACGCAGCCGCCGCGGCCAATCAGCAGCAGacgcagcagcagcaggccaATCAGGCAGCAGCACAAGCCCAGTCTCAAGCCAAACCCGAACAAGCTCCGCCTCCACTTTTGTCACAGCCTATCCAGCTCACTGCCCAGGACATTCAGCAGTTACTGCAGTTACAGCAGCTGGTCCTGATGCCCGGTCATCCTCTGCAGTCTCCGGCTCAGTTCCTGCTTCCTCAAGCCCAGGCTCAGCAGGGTCAGCAAGGTTTGCTGTCAACATCGAATTTGATTCCACTACCTCAGCAGAGCCCAGGGAGTCTTCTGACCTCCCCACCTAGACTGGGCCTTCAAGCACAGCATCATCTTGACGACAGGCTGTGGTCATTGCAGAGGGAGAAGAGCGTGGAGAGCGCCGTGAGCTCCGCCCCCTCCTCAGCCCCGCCCATGAGCTCCGTTCCCACGGTGACAGCTCATGCCGAGGAGCCCAGCGATTTGGAGGAGCTTGAACAGTTCGCCAGAACCTTCAAACAGAGGAGAATTAAACTGGGCTtcacacagGGGGACGTGGGTATGGCCATGGGTAAGCTCTACGGCAATGACTTCAGTCAGACCACCATCTCACGCTTCGAGGCTCtcaacctcagcttcaagaacATGTGCAAGCTCAAACCCTTACTGGAGAAATGGCTGAGCGACgcagAAACCATGGCGATAGACAACATGCTGCCGAGCCCCAGCTCTCTGTCTTCTCCTCTGCTGGGCTTCGAAGGTTTGCCTGGACGCCGCCGAAAGAAACGCACCAGCATCGAGACCAACGTCCGCATAGCCCTGGAGCGCAACTTCATCTCGAACCAGAAGCCTACCTCTGAAGAAATCCTGCTGATGGCCGAGCAGCTCAACATGGAGAAAGAGGTCATCCGAGTCTGGTTCTGCAACCGGCGGCAGAAAGAGAAGCGCATAAACCCCAGCAGCGCCACCCCTCCTCTGCCCAGTCAGCCTCCGGCGCCCACGCACAAGCCGCCCTGCTACAGCCCGCACATGATGTCCAGTCAGGGACTGGTTCAGGCCGCTACCAGTCTCAGCACAACAGCTGTCAGTCCCACACCTTCTATGGCCTGCCCTCTCAACCCCAGTGGACATGCAGTGATGAGCTCCGCCCCTTCCTCTGTGACTCCGCCTCCTCTCAGCACAGTCAGCCCGACTCCGCCCAGTCTCAGCAGCCCTGGTCTGAACACAGGGAACACAATGCTGGGTGTAAGCACAGGAATGAACCAGGCCCTCATCAGCAGCAACCCTCTGGCCACAATGCAAGCCCTGGCTGCCAGTGGTGGCCAGATGCCCATTTCCGCTCTTGAGGGCAGCGGTCAAATGTTCCTGGGTGGAGCTGGAGGTCCAGGAGCTGGACTTCGCCCGTCCCTCTTCCTAAACCGCCCCACTTTACTGCCCCTGGCAAGGAGCGCAGGCATGGGTCTGGTCGGCACCCCTAGGGCTTCTCCGCCTCCTGGCGCCAGCGGCACAAGCCCAGACTCCTGCTCCGTGTCTCCCTGCTCAAGCCCCGCCTCTTTTTGCTCGTTAGGCGATGCCTCGCCGCCCCATCTGGGCGGAGCCATGGCTGAGTGACGCCCACACCAACCTGCTGCACCTGAGGGGAGTCAGAGGAGCGGAAGAAAGAAGACAAACAAGACTCGCCTTTTCAACCAAAGCCATCTCTCACtccctccatttctctcttgtgctctctctctctcattacgtcttttaatgccaaaaatacagagaaatgAGCAGAAGAGAACAGGGATAAGGAGAGAACAGGATCACGGGGGACTGTTTAAACCAAAAAATTGACCTACGCAGCGTGGAGAGGTGGCTTCGACGGAGCTACTTTGAGAATGTACATTTATTCCtttccaaatggaaaaagaCAAACACGAACAGATGAATTTGAGGGCAGGGTTGAGAGCCAAAAAACTTTGTCGAAGAAACAacaaggaaaaaaggaaaacggGTGGCAATGAATGGAACAAAGGAAGGACATCTGACAAGTGTCACTGGATGGTAGAGaagagaaaccaaaaaataaacacacggAGGACGAACGAAAAAGActcacaaagacaaaaaaatgccaaaaccaaaataccaaaaaccaaaaccaaaaaatcgGAGAGAAAAGCTTTACCTAAGACTTTGAAACCTGACTTGTCCAGGATCAGATTAACTCTACACAAAACCAAATATCATTTCTCCATGCACCCCTTTTAATTTCaactttttgtaaatgtatttctcaATCTACCTCTGCTACCAAGTATTTAGattttctcattcttttcattgcattttaacttttgatccatgacattttcagcaatttttcaTGTCAAACTTACAATGAAAAACACGTCACCAAACGAATTCAGAGggatttttctccattttcaacagtattacacacacagacatatactgTGATTCCCTTTCCATCACTTATCATCCGCTGGAATCGCATTCATGCCTCAAACCTCGACTCACTTTTCTTGGATACCAAAGCGTTGTCTGGCCTTTCGCGTCAGCTGAAAGGTGCTCAGATGACAAGACCTCAGacgtgtcaaaaaaaaaaaaaaccaacatacATGTGgagaaatttaaaaacaaatcccCCCGAGCCCCCAAACCCCTGCCCTCCATCCTCTCTAGACCCCTCTCCTGTGCCtcggacaaaaaaaaacgtggGCCAAACGAAGAAAAACAAGAGGAGCAGCGACTGAAGAGGATCTGAGGAAACTCGCAGGGAGAACTCCAACAACCGAGAAGCTGAGGGGAGACATGTGATGtcgccatttttttttttttttagttcagtttttttttttttacactatttttCCAACTCACGGattaaaccaaaaatgaaaccaaaccaaaacCAATGGACTAAAACTGAACTTTGCTCCATGGAATGAAACCAAATACTAGGAGTGGACCACAGGAGGTGCACGAGGAGGAGGTTTTTAGAGTAGCAAGACTCGTGAAAAGACTCGCCGCGGCTTTGACCAGAAGATCATTCCTTCACCTCCTCCCTCCTTCTTTCCGTTAAGTCGATGCTTTCACTCTCCTTACTGGACGGGAGAATATTTATTAACCTCATCGAACTGAacttcagaatatatatatatacatatatattttgttttattgctttttcctCTTGGTCTGTCTGTTTATGCTGTATGACTCGTCtcattgctttatatttttgggaTGATGGGGTGACGTATTGCCTATTTTCATATTTCGTGTGTTTCGTCATTTTGAATTGATCGTGCCGGGGGGAGGGGGGCTTCCTCATCAGGCGGTTTGAAACAATACTGTGAACATGTAGCTTCCAAGTTTTGCTTCGATTGCGAATGTTGTGAAACGATAAGCCAAAACCGAAGACATACCAAAAGcgaaaacttttcttttttgacacCAAATAGCAACCTAACCAATGCACAACGGCGTGGAGAAAGACCGTATTGGTGCTAGGTCTCTTCGACGAGAGATAGGGAGACGTGTGTGAATGTGGAAGCTCATCTCCAGCATggaaaccaaaccaaaacacGACCGTTAGGCCAGCGTAACTTTCGCCCGGCGTGTCGGCAAAACCGTTTTTTGACTGTGTGATCGTAGACGCATACAAAAAACGCAGACTAATGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250747.1 lncRNA upstream 45444 27607787 ~ 27619661 (+) True LOC122343300
XR_006250749.1 lncRNA upstream 48247 27607787 ~ 27616858 (+) False LOC122343300
XR_006250748.1 lncRNA upstream 48247 27607787 ~ 27616858 (+) False LOC122343300
XR_006250746.1 lncRNA upstream 48247 27607787 ~ 27616858 (+) False LOC122343300
TU46445 lncRNA upstream 48278 27607787 ~ 27616827 (+) False LOC122343300
TU46532 lncRNA downstream 840 27712246 ~ 27713190 (+) True G31520
TU46558 lncRNA downstream 86567 27797973 ~ 27798209 (+) True G31540
TU46561 lncRNA downstream 112000 27823406 ~ 27823705 (+) True G31543
TU46576 lncRNA downstream 200911 27912317 ~ 27951998 (+) True G31549
TU46577 lncRNA downstream 200911 27912317 ~ 27951998 (+) False G31549
XM_043237686.1 mRNA upstream 15560 27622672 ~ 27649545 (+) True atp1a3a
XM_043237688.1 mRNA upstream 65847 27460515 ~ 27599258 (+) True pvrl2l
XM_043237687.1 mRNA upstream 121862 27460481 ~ 27543243 (+) False pvrl2l
XM_043237111.1 mRNA upstream 222905 27436433 ~ 27442200 (+) True tcf19l
XM_043237110.1 mRNA upstream 229077 27419543 ~ 27436028 (+) True LOC122342913
XM_043237145.1 mRNA downstream 13715 27725121 ~ 27751872 (+) True erf
XM_043237147.1 mRNA downstream 13715 27725121 ~ 27751872 (+) False erf
XM_043236328.1 mRNA downstream 45119 27756525 ~ 27778786 (+) False cica
XM_043236329.1 mRNA downstream 45119 27756525 ~ 27778786 (+) True cica
XM_043237690.1 mRNA downstream 68044 27779450 ~ 27792872 (+) True gsk3aa
TU46402 other upstream 297115 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 297115 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 306958 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 441119 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 523481 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 495552 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 507327 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 573621 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 573621 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 588621 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile