RNA id: XM_043236234.1


Basic Information

Item Value
RNA id XM_043236234.1
length 2626
RNA type mRNA
GC content 0.45
exon number 16
gene id slco1e1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13708792 ~ 13717223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAATGGCCGCTTGAGGGGTTTCTGACTGGGAGGGGAGAATTAGCCCAAACTAAATCTGAGAGGATTATCAGAGTAAGTCATGAAAACACATGAAAAAGGCTTTCTGTTTCATGAGATGAAGCAATAGAACAGAAGTTAACCTTTGCCTGCTGCAAGAattggaggattttttttcattagtattttcttttttaattaataaatataagCAAAATGTCTGAGCCTGCTGCAGAGGACAATGGTAAGCCGACCAGCCAACAAAATCTTTGCATTCCAGGAAAAGAGGCCCCAAAGGACCCCCGCTGGTCCAGTCTAAAGATTTTTATTGTGGCCCTTTCCTTCGCCTATTTCTCTAAAACTCTGTGTGGGACCTATATGAAAAGCGCCATCACTCAGATTGAGAGGAGATTTGACCTTTCCAGCTCTGTTGTGGGCCTTATTGATGGCAGTTTTGAGATGGGTAACTTGCTCTTTCTGGCAGTGGTTAGTCATTTTGGGTCAAGACTACACAGGCCACGACTCATAGGGATGGGCTGTTTCCTCATGGCCATTGGCTCAGCGGTTACTGGGCTGCCACACTTTTTCATGCGGCGGTACAAGTACGACACAGTAATAACAGGCTCTCTAAACAAATCTGTCAGTGTATCTCCTTGTCAGCCTCCCGCGGTTTCAAACGATTACTCTTCTAATAACATTGAAACAGATTGCCTGAAGGACCCTGGATCTAGTATGTGGATCTATGTGCTCTTGGGTAACGCTCTCAGAGGAATCGGAGAGACACCAGTCACACCTCTTGGCATATCTTATATCGATGACTTTGCAAAAGCAGAAAACTCagcattttacatttCCTGTCTTCAGACTATTATGCTTCTGGGTCCCATGTTTGGATTCCTACTGGGCTCAATGTGTGCCAAACTGTATGTGGATATTGGATTTGTCAGTGTAGAGAGTGTTACCATCACTCCACAGGATGCACGCTGGGTGGGAGCTTGGTGGCTGGGCTTCTTTGTGTCATCTGCTATCTTAGTACTTGCTGGTGTTCCTTTTTGGTTCCTACCCAGGTCTTTACCCAAACAAGGAGAGGAAGGGAAGGAAAACTCTAGTGCGGATCGGGACAACAAGGATCAATCTGTcctcccaaacacacactcagtgaAACTGTCCGACATCGCAAAAGGATTCCTGCCTTCCCTGAAAAAACTCCTGTGCACTCCTGCATACTTCCTGTTGCTTTGTGGGATTGTTTTGAAGTTCAACTCTTTCATCGGCTTGCTCACCTTCAAAGCCAAATACATGGAACAACAGTTTGGCCAGTCTGCTTCAAGAGCAAACTTCCTTATTGGTGTCCTGATCCTGCCTGTGGTCGCTGTGGGAATATTCTTGGGTGGTTTGTTAATGAAAAGATACAAGTTGAGCGTCGTGGCAGGGGCTCAGCTCTCCTTCATCACCTCCTTCACggccttcctcctcctcctcctccatttCGGCACAAAGTGTGAGAATGTGCCTGTGGCAGGGCTCACTGTGTCCTACAATGGGACCCCTGAAATATCTCATGATGAGCGCTCACTCATGTCTCAGTGTAACCAGGACTGTTCCTGCTCTGCATCTGAATGGGATCCCGTGTGCTCTGACAGTGGCATTACATATGTGTCACCCTGTTTGGCAGGATGCACCTCCTCCACTGGACAAGGCAAAAACATGGTTTTTCAAAACTGCAGCTGTGTGTTAACCCCCTCACCAGTAGAGGGCAGCAGATCTGTGTCTCTGGGACAGTGTCCCCGTGGGCCAGGATGTACCCGGAGTTTCACCTCTTACATGGCAGTTTCTGTCCTCAGCTCCTTCATCAACTCTCTGGGCACAACTCCTGGATACATGATCATTATACGATGCATTAAACCTGAGCTTAAGTCACTGGCGTTGGGTATTCAAACGCTTGTGATGCGAACGCTAGGTGGTATTCCTGCTCCTGTATATTTTGGAGCTCTCATTGACTCAACGTGTTTAAAATGGGGGATAAAGAGCTGTGGGGGCAGAGGAGCCTGTCGTTTGTACGACTCAAATATGTACAGAGTGATCTTCTTGAGCCTGACTACGTGTTTAAGTGGATGTTCGTACTTCTTCATCATTGCTGTCATTGTGCTTCTGCGGAAGCAGTTTAGAAAAGAAGAAGTCAAAACATTGCATCAAACAACCAGAAAGCAAAATGAAACCGAACTTCAGTCTCCGGATATGTGCCGTCCTGATGGATCCAAAACCGATACCGTTCCCAGAGAAAAAACAGAGAACACCAATACTGAATGCTAGCGATGAGCTATTTAGTAGTTCTTTCAGGGAATTTAGGAGACAGTGCTGATACTGTAAATTAATGGATGAAGaactactaataaaaacaatgaccaGGGCTGCGGTTCCCAAAAGTAAGCCTAAGCTGATGGTAGCTCCATTGGTTTCAATGGGTCTATGATGTACTTAAGGTTATGGTTCTTTTGGGAATACAGCCCTGGAAAACAGACTATAAAGAAACCAGCGCAAGCCATAACACTCTTTAGGCACTATCGTACTATGTGTTCATGGTCCAGAGTTTGTACAGTATCTCTTAATAAATCTCAGTTCTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 96021 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 276089 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 276123 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 364535 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 389044 13311873 ~ 13319748 (-) True G28377
TU42310 lncRNA upstream 103601 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 149682 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 152327 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 162936 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 164210 13881305 ~ 13882012 (-) True G28569
XM_043237835.1 mRNA downstream 713 13702383 ~ 13708079 (-) True LOC122343398
XM_043237836.1 mRNA downstream 10077 13692471 ~ 13698715 (-) True LOC122343399
XM_043237707.1 mRNA downstream 21152 13683225 ~ 13687640 (-) True LOC122343316
XM_043237997.1 mRNA downstream 29704 13674271 ~ 13679088 (-) True pyroxd1
XM_043237995.1 mRNA downstream 43655 13652525 ~ 13665137 (-) True LOC122343493
XM_043237143.1 mRNA upstream 1509 13718604 ~ 13729434 (-) True slco1d1
XM_043237144.1 mRNA upstream 1509 13718604 ~ 13729354 (-) False slco1d1
XM_043236996.1 mRNA upstream 19510 13736605 ~ 13748988 (-) True LOC122342857
XM_043237139.1 mRNA upstream 33739 13750834 ~ 13760856 (-) True LOC122342931
XM_043237140.1 mRNA upstream 33739 13750834 ~ 13760851 (-) False LOC122342931
XR_006250767.1 other downstream 10077 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 10077 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 286253 13411624 ~ 13422539 (-) False G28397
XR_006250597.1 other downstream 346854 13316932 ~ 13361938 (-) False tmcc3
XR_006250741.1 other upstream 98479 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 258262 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 452327 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 978765 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 1091502 14808597 ~ 14810137 (-) False LOC122342642

Expression Profile