RNA id: XM_043236238.1


Basic Information

Item Value
RNA id XM_043236238.1
length 1887
RNA type mRNA
GC content 0.50
exon number 4
gene id lrrc17
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10423932 ~ 10433495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCACGGAGATGCAACGTGTAATTTAAAACCAGGCACAAGCTTGGGGGCTGCACtgagcctcacacacacatatgctcatgcacatacacacacgcatacagtcAGATCGCTGAGTTCAGGCAGCCAGCTCCGCACAAAGCTCATGACAGGACCTAAAGATCAGCTAACAGGACATATCCAGATTGGATTTCGGATGTATTTCCCTGTGCACAGGGACTGCAGCTGTGCCCCCTCACTCTGACTAAAGCTAGCTCTCGGGTTAAACAACGTTTCGCTGAGACTCTACTTGACTGGTTAGCCCAGCTGCTGCTGTTTGCCATGCGGCTGCTCTGCggtctgctgctgctgctgtgccTGGTGGTCTGGGCAACTGAGGCACGAAAGGGTGGAAAGGGACGCCGAATGCGGAGTCGGGATCGGTCAAGTACCACCAAGCGGTTTGCTGCAGACTGCAAGGAAAGTACAGCCAATGGGGAAAAGTTCTTTGACTGCCAAGATCGCCATCTGACAGCCGTACTATCGGGCTGGCCGGAGGACATTCACCACCTGCTGCTAGCTCGGAACCGGATCCAGGTGCTGCGAGACAACACCTTCAGTCAATTCCGAAACCTAAAAAGTCTGGATCTCCAGCAGAATGAAATCTCCCGCATAGAGGAGGGAGCGTTCAACGGCCTGAGCAGACTCACCACTTTACTGCTGCAGCACAACCGTCTGCAGGTGGCCAGCGAAGGCATGCTGATCCCAATGCCGCAACTCAAGTACTTGCGACTCCATGACAATCCCTGGTGGTGTGACTGCCAGCTGGACAGCCTGGTCAGGTTCATACAAGTGCCCAGTAACCGTAACATCGGTAATTACGCACGCTGTGCTGAGCCCAGGGATTTCTGGGGGAGGCAACTGAAGAAGCTGGATGCAGAGCTTCTGTGTACTCCTCAGCAAGAGAACGTATTGATCCCAATATATCATCCAGACAATCAGTCCCTACCagctccacaaaaaaaaaatgacgcAACCTCTCTATGCCACACTTACATGCACCCTGTGCCACGCCTGGACTGCAGGAACCGAGACCTTAAAACAGTGCCGGCTGACATCTCGTTGGACATTGTGAGACTGGATTTATCCAGAAACAACATCAAGCAGCTGAGACCAAAGGAGTTTGTAAACGTTAAAGACCTCAAGCTCTTGAACCTGAGCGGAAACAGTCTGGAAAGCATTGACACAGCTGCCTTTACAGGCCTGCTGTACTTAGGAGAATTGGATCTGTCCAACAACAGCCTGCGCTATTTTCAATATGGCGTTCTGGAGGACCTCTACTTCCTGAAAAAACTGTCTCTGGAGGACAACCCCTGGATTTGTGATTACAACATTCATTACTTGATCTATTGGCTGAAGCACCACCCCGGTGTGTCCCACACAGGTCTGGTGTGCAGTGAACCAGAGGAGTTTCGTGGTTGGCCGGTGGAAAACTACGTCAAGACCTACAACGCAGACTGTCCTAAAGACAAGCAGCTGGGCCAGGTGCCTGGCACTGACCCGGCAGGCATCACAGCTCAGGAGCTCACAGCTGAGATAGATGAAGAGGAGCTGTTTTCAGACTTGGGGCCCAGACCTTACAGAGGGCCGAAGAAATTTGAGATCATCCGTCTGACTTAAGATGGAAACTGTGATGCTGTTgggaactcttttttttttattttgtcatgaacaaatcattttccCAGCAAAATTCTGAGCGAGAGATGAAACTTTAATATGCTGTCACATTTGCTGAACAGTTCAGTTCAAGCCGAAATCGAGCAGTTGATGTTTACGTATTTTTTAGTATTTCTAACGAGTAATTTTGTAAATTGAATcatgataaataaaattgtttgatttggg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41330 lncRNA downstream 34127 10389447 ~ 10389805 (-) True G27883
XR_006250795.1 lncRNA downstream 74641 10322734 ~ 10349291 (-) True LOC122343524
TU40941 lncRNA downstream 285876 10083419 ~ 10138056 (-) True G27628
TU40939 lncRNA downstream 408178 10015182 ~ 10015754 (-) True G27627
TU40887 lncRNA downstream 679145 9697696 ~ 9744787 (-) True G27581
TU41345 lncRNA upstream 12940 10446435 ~ 10507553 (-) False G27894
TU41344 lncRNA upstream 50761 10484256 ~ 10507553 (-) False G27894
TU41360 lncRNA upstream 51427 10484922 ~ 10486071 (-) False cacna2d4a
TU41343 lncRNA upstream 56516 10490011 ~ 10507553 (-) False G27894
TU41346 lncRNA upstream 56516 10490011 ~ 10507553 (-) False G27894
XM_043236165.1 mRNA downstream 2771 10414195 ~ 10421161 (-) True cep83
XM_043236164.1 mRNA downstream 3431 10414195 ~ 10420501 (-) False cep83
XM_043238018.1 mRNA downstream 10197 10404599 ~ 10413735 (-) True si:dkey-159a18.1
XM_043238029.1 mRNA downstream 20174 10398091 ~ 10403758 (-) True fam3c
XM_043238026.1 mRNA downstream 42217 10375837 ~ 10381715 (-) False dennd6b
XM_043236589.1 mRNA upstream 13150 10446645 ~ 10448364 (-) True LOC122342631
XM_043236585.1 mRNA upstream 15344 10448839 ~ 10451807 (-) True fgl2a
XM_043236582.1 mRNA upstream 30266 10463761 ~ 10476981 (-) True LOC122342626
XM_043236584.1 mRNA upstream 43718 10477213 ~ 10484101 (-) False stk38l
XM_043236583.1 mRNA upstream 43718 10477213 ~ 10484101 (-) True stk38l
XR_006250794.1 other downstream 60366 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 66727 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1123753 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1414628 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1482661 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 988574 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 993002 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1581136 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 2048425 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 2048607 12482102 ~ 12489156 (-) False cpm

Expression Profile