RNA id: XM_043236252.1


Basic Information

Item Value
RNA id XM_043236252.1
length 9494
RNA type mRNA
GC content 0.47
exon number 20
gene id erc1b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3119515 ~ 3306758 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACGTCACTCGAAGCGCCCTGGCTCGTAGCTCTGgcaaagagaggaagaaaacgACAGAAGTACTCTAAAACAGGGCTTTCCCCGCCGTTATCAGCTCTCAAAGTGATAACGGTCTGCCTACAACAATAGATACAGGCGCAGCCATCTGACCAAACCGGACTAACCTCTTGTGGAAGAAGGAATATAACATGACCCGATTAAACGGATAAACCAGCCACTCTTCAACACATAGTGAAAATGAAACCTCTTCATTTTTGTATGCTTACAGTAAGCCAAAAGTAGACCCTTCaagatttacaaaaatcatCTTATCAGTCCATATCGTCCTTTTCTCTTCACGTTTGCCCTTCTCCGGTCAAAACCACCATGTATGGCAGTGCCCGATCCGTGGGCAAGGTGGAGGGCAACCACAGCGGCGGGAGCAACCAGAGTCCTGGTCGCTCGCCCCGTCTCCCTCGCTCGCCCCGTCTGGGCCACCGCCGCACCAACAGCACAGGGGGTAGCGGAGCCGGAGCGGGAGGTCCAGGTAGTAAAACCCTTTCCATGGAGAACATCCAGTCTCTCAATGCTGCCTACGCCACGTCTGGCCCCATGTACCTGAGCGATAACGAGGTGGTGGCGTCCGGCCCGGATCTGCCGAAGAGCACCATGACGCTGGGCCGCTCGGGAGGACGGGTGCCTTACGGGGTGCGCACCACCGTCATGGGATCCAGCCCGAACATCTCCACCGGGGCCCCCGGCTCCGTTCCCACTGATGCCATTGCTTTCGGAGACCACCATATGCCTTCCACCCTGGCGTCCACTGTGCCTCATTCACTGCGCCAGGCGCGGGACAACACCATCATGGACCTGCAGGCCCAGCTCAAGGAGGTGCTCAGGGAGAACGAGCTCCTGCGGAAGGAGGTGGATGTGAAGGAGAGCAAACTCAGCTCCTCCATGAACTCCATTAAGACCTTCTGGAGCCCTGAGCTGAAAAAGGAGCGAGCTCTGCGCAAGGACGAGGCATCTAAGATCGCCGTTTGGAAAGAGCAGTACAGGGTCGTCCAAGATGAGAACCAGCATCTCCAGATGACCATCCAGGCACTCCAGGACGAGCTGCGGATCCAGAGAGATCTGAACCAGCTGTTCCAGCAGGACCCCAGCGTTCGTCCCGGAGAGCCCCTGACCGCCGAGCTGACCGAGGAGAACTTCCAGCGGCTGCACGGTGAGCATGAGCGGCAGGCCAAGGAGCTGTTCCTCCTGAGGAAGACTCTGGAGGAGATGGAGCTGCGCATCGACACGCAGAAACAGACGCTCTGCGCTCGAGACGAGTCCATCAAGAAGCTCCTGGAGATGTTGCAGAGCAAAGGGCTCTCTGCCAAGGCCAGCGAGGAGGACCACGAGCGGACGCGGAGGCTGGCTGATGCCGAGATGCATATCCATCACCTGGAAAGCCTTTTGGAGCAGAGGGAGAAGGAAATGGTCTTGCTGAGGGAGGATCTCCACCGACGATTTGAGGGAGCTCCAGAATCCGCCAAAACCAAGGCCCTGCAGACTGTCATCGAGATGAagGACTCCAAGATCAGTTCTCTGGAGCGCAGTCTGAGGGACCTGGAGGACGAGATACAGATGCTCAAGTCGAACGGGGCTCTCAgcacagaggagagagaggaggagatgaAACAGATGGAGGTCTACCGCAGTCACTCCAAGTTCATGAAGAACAAGGTAGAGCAACTGAAGGACGAACTGGCGCAGAGCGAAGCGCAGGGCGAGGAGCTGAAAAAGCGGGCGGCTGAGCTCCAGCAAGAGATTGACCAGGTGAAGCAGGATCTCTCCAGGAAGGACACTGAGCTCTTGGGCCTGCAGACTAAACTGGAGACGCTCACTAATCAGTTTTCTGACAGCAAACAGCACGTCGACGTACTCAAAGAGTCTCTCACTGCCAAAGAACAGCGTGCTGCCATCctgcagactgagGTCGACGCTCTGCGTTTACGTCTGGAGGAGAAGGAGGCCACGCTTAATAAAAAGAGCAAGCAGATTCAGGAAATGTCAGAGGAGAAGGGCACGCTGAACGGAGAAATCCACGACCTCAAAGACATGCTCGACGTCAAGGAGCGCAAGGTCAACGTGCTGCAGAAGAAGATTGAGAACCTGCAGGAGCAGCTGAAGGATAAGGAGAAGCAGATGACCAGCCTGAAGGAGCGCGTCAAATCCCTGCAGGCCGACACTTCAAACACGGACACGGCCCTCACCACGCTGGAGGAGGCCCTGGCTGAGAAGGAGCGTATTATTGAGCGTCTGAAGGAACAGAGGGatagagacgagagagagaagAGCGAAGAACTGGAGAGCAGCAAGAAAGAGCTCAAAGACCTGAAAGAGAAAGTCAGCTTACTGCAGGGAGAGCTGTCCGATCGCGAGGCCTCTCTATTGGACCTGAAGGAGCACGCCTCGTCCCTGGCCTCCTCTGGACTGAAGAAGGACTCCAAGCTGAAGACTCTCGAAATCGCTCTTGAGCAGAAGAGAGAGGAATGCACCAAATTTGAGAGTCAACTCaagaagGCTCAATCCATCGCTGTTGAGGCTCAGACAAATGCCGGACTGTCAGAGCGCATTGCCACACTCGAGCAGGAGGTGGCGCGTTACAAAGAGGATGCTGGGAAGGCACAGGCTGAGGTGGACCGGCTCCTGGAAATCCTCCGAGAGATGGAGAATGAGAAGAACGACAAGGACCGCAAAATCGGCGAGCTGGAGAGTCTGCTTTCAAGGCAAATGAAAGACCAAAGCAAGAAGGTTGCCAACCTCAAGCACAAAGAGCAGGTGGAGAAGAACAAGAATGCTCAGTTGATGGAAGAGGCTCGTAAGCGAGAGGATAACATGAACGAGAGTTCTCAACAGATCAAGGATTCTCTGAGGCAGAAGGACGATCGCAtcgaggagctggaggaggccTTGCGTGAGAGCGTACAGATCACGGCCGAGAGAGAAATGGTGTTGGCACAAGAGGAATCTGCCCGTGCAAATGCAGAGAAACAGATGGAGGAGCTGTTGGCCGCCATGGAAAAGGTGAAGCAAGAGTTGGAATCCATGAAGGCCAAGCTGTCATCTACCCAGCAGTCTCTGGCCGAGAAGGAGACCCACCTGACCACTCTGAGGGCAGAACGCAGAAAGCACCTGGAGGAAGTGCTGGAAATGAAGCAGGAGGCGCTATTGGCAGCCATCAGCGAGAAAGATGCCAACATCGCTCTACTAGAGCTGTCGTCctcaaagaagaagaagactcAAGATGAGGTGGCTCTGCTAAAGAGGGAGAAGGACAGACTGGTACATCAGCTCAAACAGCAGACGCAGAACCGCATGAAGTTAATGGCTGATAACTACGAGGATGACCACCTCAAGGCCTCCAATTCTGACCAGACCAATCATAAACCCTCTCCGGATCAGATTATCCCCCCACTCATAGACCTCAATCAGAACCGCAGTAAGCTGAAACTGTACATCGGCCACCTCACGGCCCTGTGCCACGAGAGAGACCCCCACATCCTGCAGGACCTGGCCCCGCCCTCCGCATACCACCGCAGCCAACAGGACGCCTGGGAGGAGGAGCTTCAGAAGATGAGCCCCGAGCAgCTGGAATCCGAGCTGGAGCAGTGTGAACGAGAGAGTGCCGAACTACAGGAATATGCAAACTCCGTCCTGCAACAGATCGCCGACCACTGCCCGGACATCCTGGAGCAGGTGGTCAATGCTCTGGAGGAGTCCTGCTGACCGGACCGGATCACGGAGCTCGCTCTTCCTGCTTCTACTTCCCTTTCTTCTGTGTTTCACCGATTTCACAGAATGCcagcacacaaaacacaaactctCGTACCCTCACCCACATGCACGAATCAAAGGACAGACACACATACGGGAAAGACTGACAGCTCACAAGTCAAGTGCACGCTTGGATTAGCTTGGAGGTGTGGGAACAGTGGGCTTTTCTTCTGCCCTCCTTACCACCACATTCATCCCCTCCGCACCTttgcattcaaataaacatGGGGAAGAAGAAACCGAAAGAGGGAAACGGGCGGCAGGGAAGCTTAGTATTATAAGACTCATTCACTCATTTAGCTAAACCCGTCCTGCGGGAGGTGAAGTTCTCTCTGTGAGGGTCAGGAAATAGTCTCCTTATCTTGATATACACTATTGCCACAGCTCTTAAAAGCTGCAGGATTTTGAAACCGTTTTGaagcaatttagatttttttttttttcctccccttcCCTTTTCCTAGATGCTTTGTTACTGACGTTAAATTATGGGTCATTCGCGCAGGGCAAAACTCCTGCACTCTCAAACCATCTGGTTTCACTCAAAACTTGGTTAATGCTCCGGTTGTGCCAGCAGACAGTCCATGCGGACTTTAACATACTTTTACTATCGAAGTCGGTAGCGGGTTTAGATTACTGCAACCCCCACCATCTGGGAATTTACTCTCGACTTGGTCACCGGCCGATTTCCTCCCCAAGTCTCGTTCGTAAAAGTTACGAAACGGACAATATGGGTAATGTTATCCCGTATGCACCTGTCACCAGCTAAAGAAACCACAGCCCTGGTTTGTGTCTGTTAAAGGTGAGAGGAAGAAAATTATTTGCCTTGGAAGTTGTAGGTTTATTGCTGCTAACATTTGTCTTTGCATGTGGCAGGTTTGGTTTGCTGGTGTTTTTCTATAGCTCTCTGATGCCGAGGGTGTATTGCCGACGCAGATGTTGTGGACACAGAAGTGCCTCATCATCAGAGAGCAGCTGCCATACAGCACTGGAATAGGAAAATAGGCACCTATCACTCATTCCGTACTTTGAAAACTATGCGGTCTCGCACTGGGATGAAGACCGGCGGTCTTGCTCGATTTTCCAAAGCAAAGAGTCGAGACTACAAGGTTGTTCTTGACGGATGAGAGTAGCTGTTTAGATACCCGCTTGCTTTATTCCActctctcttaaaaaaaaacggttGCTTTGGGAGATACCATCAAGCTTTGATCCCAAGCATCTCGCATGTACCATCATGCTCCCGTCGTTCTCTTTGCTTGGCTTCGTatcgtcatcatcatcctcctcctcctcagaccCGGGCGTCTCTGTTAGCACAGCCGGCAGGTGTATCCTCTTTCACTTTATGGTTATATGGGTCTATATCCGTTGGCATTGGGTGTCCCTTTTTGGAGTGATAAGATACAACCTCGTTCAACTTGTGATAAACGCATTCGGCTGTTGCTTTAAAGTCCAGAGTCGACTTCCCCTGTGGATGACACTGGGCGTAACGTGccctctgctcctctctctctatatctcctCATCCCTCCCTCATTCATGCCTGTGTGTAGTTTATGGCTCTGACCTGCTGTGTTGTGTTAGTCATACTCCTCTCTGCACGATAAGCCCGACAGACAAGACAAACAGCTCGAGATCACAGCGAATATAATCGCCACACCACCTCTCCTCATGCCCATACGCACTGGTTGTGAAGGAACCTGCCACGTGTTGTGGGGCCAAACGTTTGATTGCACTGCGAGTCTCTAATCTAGTCGCTGTAACTAGCACTAGTGCATTGTTCTCCAGAGATTCGGGATTGTTTGTCTCTGTGAATGATTTAGACTGAAAGACGGGTTTGGGTGAATTTCGTAAAAATGCTTTTCGGTCACTTTGTACgccaaaatcaaaagaaattatATGTTGCATAAAAAGGGATGAAGCTACATTATTTTCCTTTCCTCAGAATAATATTCttattatgtcttttttttaaattattattagcatcATTGTAAGCAAATTTCTCATGAGATTCTGATCAAATCCAAATCtaagtgtaaaatattttaaatgtgcataaattacagtaactcaaaaaaatgaaccataattattattattttatatatatatatatatatatatatatatatatatatatatatatatattaatgataattgaaaatatgtaataagacaatatctgtttgttttcttaaagcaaaatataattttctgttTTCCATTTACTTATCatgttttgtgagattcacctaATTGCATCTATAATTAACTAAAGCCCAATGTGACAGTGTGGAGCCACTTTAACAACATATTCCCACGCTCACATGGGCAATGCCAAGAGAACGCCCGTTCGCGTGCCATTCTCACCCTTGGCGCGTCGATCTTATTGCAGTCATATACGCGCGTATCTATAAAGTCTTTTATGGTTTTATGCTCTTAATTACAGCTGATGGACTTCCTTATGAGGACATAAATGTGACGAGCAGCTCTTTTGGGCTTTTAAAATCAAACCGCTGATTGATAACGTCCTGTTTTTCATCTCTGTCGCTTTCTTCCCGTCTGCTATCTCATTCAGGCACAAACACAGTTTTGGCCGTCACCCGTGGGTCTCTGAAATATGGGGCTCAGTTATCTGCACCGTGGCTGAATCTCCCCGCTTAGACTAAACACAGacctatcacacacacacacacacacacacacacacacgctcgctaTCACAGGCCCCCTCTCGATTTATGTCCTTCAGTACAGGAGCTGGCCTCTCAGCGCAGAGCACTCCGGAGAATTCCCTAAGAAAACATAAAGAAGGAACGCTGTGATAACCGGGAGCAGATCAGAGAAAGAATGACCCGGCGCTTTGCAGAGGGTGTTATTGTGCGTTGAGTGAGTGTCTCTCTGGAGCTCTGGTATTTGTGTGATTGCTGGTTATAGGCAGACCTAATCACACAGAAGAGTATGGAAATTCCCTGCAGGCTTTGGATCGCTCCGTATGCGTCCCAGTGATTCCTCCTTATGTTTTTGAGGAATCACAGAGATCTACACCAGCGCTCTCTGCTCAGTAGCTAATTACCGATACTACCCACATTCAGTAGCACTTTGTGTGAAGCCTGTATCTATTACGGTATTTTGAGGGCAGATTAATTCACAAAAACCTTGCTTAGTCATGTTTACAACTATaaacatgcattgtttttttaagggtGTAACCATTGGGTAAGTATTATAGTGCATTAAAACTAGTCATAATTAATTACAACTGATAAGTTGTGTTACAAGGAATTAAGAATGCATCATATGAGCAAAATTGGGTCGCTTTCTGATCTCGAAGATGGAAATCGGCccatttgtgtttatataatgcattagaaCACCATATAGCTGAACTCACTCTGTGTGCTCACCTATATAAACctatacaggcttcatagaagtgtttttcattttgttttgcaaactACTCTTGTTCATTTATAGGAGCAGCTCGTAGGATGTGGTCAGCTGACTTTCCACGCCGTTTGGCTTTATACATCTACCTGGCTTGAAACCGCGTTCAGCCATGAGTGAGAATGAGCATGAGGTGTTGCTTCATGTTTTAGTATGAACATTTTTCATCCTCATTAAACTCACCGAGGCATGTCtgtggagggagagagaaagagcaagcGCGGGGCGGCCAGGAACGCACGGGCTGTAAGGACCCGACTTATTTTCCACTTGCTGTCATGATTTTTATTCTACCCTATTTCGCCCTATAACGTGAGACATTTATCATAGGGTCTACTTAAATGCTTCACAAAATGGATTACATCATGTTGCATGTCCCATAATTCTTTCGTGTTAATCAGTAGTGATCCTGAGTTTTGTCATACAGATGTTATAATGGTCTTTTATTCGTTACTGTGAGAACACTGCCAGAGACGTCTCGTGCAAACGTGCATATAAAGaaatctatatttataaatgtgtcgGTGGTTAGACCTAGATTTAATTGAACAGTTCGCACAAGCATCTGGGGAAGAGAATATATCCATCTGAACAAAATGGCTGTcggctatttaaaaaaaaaacaaaaaaacaaacaaacaaaaaaaaaatgaatgaactaGTAACActaacatttgaaatgaaaattaaagaaaaagcaaagcCTTTCTAAGTGTCAAATCAAAGCTGTTAACAAAGATTTTCAAAATTGCTACCATGTGGTTGATGATGTGCTGTTGCTATCTTCTCTGCATCTTGTTCGATTTTGATTCCAGCTCATCTTGcagtaatttttctttttttttttctttttgggatTGTTTCGCAGTCCTCCATAGCGTGCGTGATTGCGATTGTTGAAAACTGCAGCGTGttttatattacaatacatgtatatgtatccTTGGGCTCGGAGAAGCATCCGTGACGGTGTTTCGAGTGGACTGAGGGATGCCAAGACCTCTGCTGGAGAACTGTGATCCTAATAGCACTCTAGGTTGCTGGAAAGTCAGGTTTATTTTCGCATTTTCAAGAGATAACACCCGTGTTGTTGACCGTTTTGGTCAGATGATCGGCATCACTCGACACCaagccttttttctttttgttcataGTAATTTATCACACACGTAAACACACTTAAAGTTTTTATGGCGTCTAAGTAGATTGCCTATTAAATTGTTTACTTATTAACTCATCTTGAATAGTCATTATTTACCCAAACGGTCCGTCAACACGTCCgcatttttcatgcattactTCCCTCCACTTAGTTTGATGGACTGAGACTGTTTAAAGCATGAAACCACATAAAACATCCGCTGAAGGATTTGGCAAGTTTATGTCTGACTTTCCGTTCTCCATCTGAATGAATCCGGTGCCAAACGAAGCTAGTCTGCTCTAGAAAGTGCCACAAATAATAACCTGCCTGTCGTTCATCAGCAACCAAAGCCAGGTCACGTGACCTTTTACTGTTTATATCATGTTTGCGTTatatttaaacctttaaacCTTAATTGACACAATAAAAGGTCAAACCAAAACCAGGCCTGCTGTGCTCGGTCAGCTGCTAGATGAAGCACCAGAACGGACCTTTATTAAGTGTGTAACGGAGCGTCTGAGTTGAATGAAGCAGCATCATTCACACGGACCTAATCTTCATTTCGACTCAGAACTGTGCATGTGGTCATTTTCGAGACTGTTAGAAAGTTCTGCGTGCCTGTATGAGAGAATATGTCAGGCTTGTAGTTGGCACTTCTTCTATTTTTTCCCTCTGGATTTTGTCCTAAGAGAGTGTCAGACCTCAATATCACCCCATCCACATCATGTTCTCTTGGCTCCAGCAACCCTGCCTTCTGTCACAGCAAGGGTCTATCTTTTCTAATGATTCATGCTCTTTTTCTACGCAGTACACGGAAACACTGTCAAGGAGGATTCTCGCCCTTTCCCCTTtaatttaatgaagaaaaataaatggaaaaatgtcaACTTTAACCCAAAGCTGGTCATCTCtcgtgtctttttttgttttttatttttaaatgatatattcatgttcacaaaaaaaaaaatactgcctTATGTCTGTGTGGAAAACATAAAAGAtttctgtaaaaagaaaatgaaaaataacaaaaaggcGCATTGTATTCAGCTTTTGCctttgtatgtatataaactCTATCATTCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37820 lncRNA upstream 88640 2935162 ~ 3030892 (+) True G25455
TU37823 lncRNA upstream 94768 3017567 ~ 3024764 (+) False G25456
TU37828 lncRNA upstream 94768 3017567 ~ 3024764 (+) False G25456
TU37830 lncRNA upstream 94768 3017567 ~ 3024764 (+) False G25456
TU37824 lncRNA upstream 94768 3020883 ~ 3024764 (+) True G25456
TU37903 lncRNA downstream 102243 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA downstream 113878 3420636 ~ 3429146 (+) True G25504
TU37933 lncRNA downstream 239364 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 394670 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 395076 3701834 ~ 3702371 (+) True G25535
XM_043236263.1 mRNA upstream 1538 3099737 ~ 3117994 (+) False ninj2
XM_043236262.1 mRNA upstream 1538 3099796 ~ 3117994 (+) False ninj2
XM_043237123.1 mRNA upstream 107428 3006873 ~ 3012104 (+) True optn
XM_043236798.1 mRNA upstream 125033 2943924 ~ 2994499 (+) True camk1da
XM_043237075.1 mRNA upstream 177935 2938072 ~ 2941597 (+) True cdc123
XM_043236827.1 mRNA downstream 4895 3311653 ~ 3381172 (+) True LOC122342760
XM_043236828.1 mRNA downstream 53431 3360189 ~ 3381172 (+) False LOC122342760
XM_043236829.1 mRNA downstream 59857 3366615 ~ 3381172 (+) False LOC122342760
XM_043236826.1 mRNA downstream 64768 3371526 ~ 3381172 (+) False LOC122342760
XM_043236953.1 mRNA downstream 272870 3579628 ~ 3601006 (+) True LOC122342820
TU37871 other upstream 1544 3115508 ~ 3117988 (+) True ninj2
TU37230 other upstream 1331436 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1446573 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1828308 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2454002 654092 ~ 665530 (+) True G24771
unassigned_transcript_298 other downstream 132373 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 134154 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 140300 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_301 other downstream 163608 3470366 ~ 3471135 (+) True LOC122343352
TU37922 other downstream 174871 3481629 ~ 3502094 (+) True G25514

Expression Profile