RNA id: XM_043236266.1


Basic Information

Item Value
RNA id XM_043236266.1
length 1778
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC122342461
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25728094 ~ 25741253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGAAAGTCTGTCGTGTTCAGTTTGAGAGCAGTGTGTCCGTATGGCCCGTGAGAATCAACCCGCAGCAGATGTCTGTCAAAGCTCAGAGCTCAGCCCGGTGGAGATGACGGAGGTAGAATACTTACAGCACATTATTCAGAGCCACATTGATGCACAGGTGACTGAGACAGACAGCTCAAGTCTTTCACGGCTCGAGGAAAGCTTGTATGAGGAGCCAGAGAAGCGCCTGGCTTGCTCGCCTTGCAGGCCGGAGGGGACTTCAGTGGGGCCCATGGACCTGCTGTTGCTGAGCGACTCAAACACGACGCCTGTTAGCGGCGCTGAGGTGCCGGGCTCCGTGCTGAGCAGAGTCCAGTGTGTCGTCCAGGAGCGGCCCCTGGAGGAGAGACCCAGCCCAGCTGCTCGGGTCTGTCTGGAGAAGAGATTCTTATCAGTGCTTTGTCATTCTACAAACACTTCAAGGACATCCACACATGCACAAATGGAGAAATGGAGTAAAACAGACAAGATGGTGAAAATACAGGGCATGTATCCATACGAAGGACGTCTGTTCAAATCTGGTGGGCAGCAGTCTGAGCTGGTCATTCCTACTGTGAGCTTCAGAGCAGAAAAAGGCTCGGAGTCTGTGAAAAGAGCTCCACTATTCATTTACCCAGACACTGCTGACCAGCAAACTACAGACACACTGAAGAATGAGGCAGTGAATAAAGCTGCGCACTCCATCAAGCACATCCGCACAAGGCCTCTCAGGTCATCTAATATCATGCAGGACCCGGAGAACTGGAAGCCATACACCGGGATGCCCGAGACTAAACGTTGCAGGACAGGACCTCTTATGGACCGAACTCAGCGCAAAGAAGTACACAACAGAAAGGAGCGCGATCGCAGGAGAAGGATCCGTCTTTGCTGTGATGAGTTGAACCTGCTGGTGCCATTCTGTTACGCTGACACCGATAAAGCCACCACACTGCAGTGGACCACAGCTTTCCTCAAATACATCCAGGAAATACATGGAGACCGACTCAAGCAGGATTTCCAGAGCACTTTCTGTGGCAAAACTGGGCTGCGGTTGAAGCCTAGTTGTGTTTCAATGACTCTCCTGGAGTCCTATAATAACATGGCAGAAGCTGCAGACTCATCCTCGCACAACTGACTTCCTCTTCGCTGCTGCAGCATTGTGAATGTTCACCTCAGTTTTGACATTGATGTTTCCCATGATGCTACGCCTCTCTTTCACTAACCTGTGTCCAGGAGACCTGAGCGCCTGTTGTCTTTGAGTCTTTTTCTACACTCCAGCtgctctttttatttcagactcTCCAGACCAGAAACGGTCACATCCTTACTGTGATATAGTTCACACACAAAACTGCACACCTttctgaatgtttgtttttatgcctTGCTTGtacattattttctatttaatgtatttattattattgtactaacaaatgttcaaaaaaaaatacttcactGAAAAGTGGCTTTATTCAGTTTTTCTTACAATACCATGCTGTAGAAACTCACTATACACACAACAGTAactcagaaataataaatagtatttaaaatcatatttaatagttttacagCACCATTATCTAGTGGATAAGGTTGATGAAGCCCACAGATGGACAACGACATATTTTACAGTAAGTGTGTCTGAAGCATCTCTGTTGATGCGTGAAGTTTGTTCCTCAAACAGTGACTTAGTTCTTAATGTTTAAgattcaaaatgtaaacataaaaaataaaatggcaaagaAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46298 lncRNA downstream 25027 25702270 ~ 25703067 (-) True G31352
TU46297 lncRNA downstream 30337 25697430 ~ 25697757 (-) True G31351
TU46281 lncRNA downstream 92946 25634948 ~ 25635148 (-) True G31335
TU46175 lncRNA downstream 264550 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 290974 25436106 ~ 25437120 (-) True G31250
TU46336 lncRNA upstream 46127 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 71387 25812640 ~ 25813615 (-) True G31385
TU46342 lncRNA upstream 72651 25813904 ~ 25815225 (-) True G31387
TU46348 lncRNA upstream 174444 25915697 ~ 25915957 (-) True G31390
XR_006250768.1 lncRNA upstream 177558 25918811 ~ 25919410 (-) True LOC122343400
XM_043236862.1 mRNA downstream 32427 25686577 ~ 25695667 (-) True kcnk15
XM_043236423.1 mRNA downstream 98719 25626607 ~ 25629375 (-) True mtg2
XM_043236421.1 mRNA downstream 102970 25610615 ~ 25625124 (-) True samhd1
XM_043236417.1 mRNA downstream 160601 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA downstream 160601 25554784 ~ 25567493 (-) True irf10
XM_043236861.1 mRNA upstream 343 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043237668.1 mRNA upstream 21279 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA upstream 21279 25762532 ~ 25778519 (-) False hm13
XM_043236136.1 mRNA upstream 211507 25952760 ~ 25955621 (-) True LOC122342356
XM_043236138.1 mRNA upstream 280891 26022144 ~ 26023244 (-) True LOC122342358
TU46256 other downstream 166896 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 341277 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 341720 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 343248 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 343689 25384248 ~ 25384405 (-) True LOC122343871
unassigned_transcript_476 other upstream 240213 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 243581 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 244712 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 245052 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 247357 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile