RNA id: XM_043236271.1


Basic Information

Item Value
RNA id XM_043236271.1
length 4658
RNA type mRNA
GC content 0.53
exon number 33
gene id dgki
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1386513 ~ 1425816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTCAGGAGAATATACCAGCGCCGTAAATCTGTTCTaaagaatgtttattattttaaaaacgttttgtgtatttatttatttttccgcTGTGCCTCCAGAGGTTCCTGGCCGAACAAAGGGTTTGTATTCACAATAAGGTCCGGTTTAAACGCTCGCGTAAACACGCTTCTTCTGCGCCGCGCCGCGTCTCGCCCGCGCGCTCTCGGCGGAGACGCTTCTGTCGCGCTCACGGCGGACACGTCAGAGATCACCACGCATTTAGCGTATCCAGTCAGAGACCCCTCTGCCCTACTTTCATTCCTGATGctggaggaggatgaggaggcaAATCCCAGAATGTCCTCGCGGAGGGATGCAGCTGTTGTCGGTCGTGCGCGCGCGTAACGTGAGAGAATCGTGAATCAATCAATcgggtagatagatagatatacagacagatagatagatagatattattcATCCCATGAGGGACATCGGAGGACGCTTTTGGAAGGACTTTTAAGCGCCGGAGGAGAGAAGGGGGTCCACTCAGTGCCGACCGGAGCATGATGGACCCCCTGGCCGACATTCGCGCGTCTCAGGCGGAGCGCAGCGGCAGAGGAGCCGCCGGTGGAGAACCAGCGGACGAGCAGACACGCGGCTGCGGGAGAGACGCGGCGATGGGCGGCAGCGACAGCCTGAGCAGCTTCGCCGACATGGAGGACTCGCTGGAGGAGAAACTCAAAGGTCTGGCGTTCAGGAAACAGATCTCGTACAGGAAAGCCATCTCACGGTCGGGCCTCCAGCATTTGGGTCCAGCCCACAGTCCCTTCCCTGCTCTGAGCAATGGACCGGCCAAGGAGCTTCGCAGCACAGTGGACTGGAGCGAGAACGCAGTGAACGGTGACCACGTGTGGCTGGAGACGAATTGCTCGGGCGATCTCTGCTACCTGGGCGAGGAGACATGCGTGGTCAAGATTGCATCGGCTCCCCGGAGGAAGTGTGCGGCCTGTAAGATTGTGGTCCACACGGCGTGCATCGAGGAGCTGGACAAGATCAACTTCCGCTGCAAACCTACCTTCAGAGAGGGCGGCTCTCGATGTCTTAGAGACCAGAACGTTTTGAGGCACCACTGGGTCCATCGCCGGAGACAAGAGGGGAAGTGTCGTCAGTGCGGGAAAAGTTTCCCGCAGAAGTTCTTCCACAGCAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAGCAGGCGTTTCATAACAAGGTCACGTGCTTCATGCTGCATCAGATCGAGGAGCCCTGTTCTCTAGGAGCTCACGCCGGGGTCATCGTACCCCCTTCCTGGATCATCAAAGTCAGAAAACCACAGAGCTCATTTAAAAACTCCACTCGACGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGGACAGATGAATCGAAGTGGCGTCCGTTCATGCTGAAGCCGCTTCCCTCTCCGCTGATGAAACCAGTGCTGGTGTTCGTCAACCCCAAGAGCGGCGGGAACCAGGGGACGAAGCTGCTGCAGATGTTCATGTGGATCCTGAACCCTCGGCAGGTGTTCGATTTGTCTCAGGGAGGGCCCAGAGAAGCGCTGGAGTTATACAGAAAAGTGCCAAATCTTCGCATCCTTGCCTGTGGAGGAGATGGAACGGTGGGCTGGATTCTCTCAGCCTTAGATGAACTACAGATGAACCCACAACCTCCTGTTGCTGTGCTTCCTCTTGGTACAGGAAATGACCTTGCCAGGACACTGAACTGGGGAGGGGGTTACACGGACGAGCCGGTGTCAAAGGTCTTGTGTCACGTGGAGGACGGGACGGTGGTGCAGCTGGACCGCTGGAATCTGCAGCTGGAGCGCGTGTCCGTTCAGACCGAGGAGGGAACGCAGAAGctTCCTCTAAACGTGTTCAATAACTACTTCAGCCTCGGCTTTGATGCTCACGTCACCTTGGAGTTCCACGAGTCCAGAGAAGCCAATCCCGAGAAATTCAACAGTCGCTTCCGTAACAAGATGTTCTATGCAGGGGCGGCCTTCTCTGACTTCCTCCAGCGGAGCTCCAGGGACCTGTCCAAGCACGTCAGGGTGGTGTGTGACGGTACGGATCTCACACCCAAGATCCAGGAGCTGAAGTTTCAGTGCATCGTCTTCTTGAATATACCCAGGTACTGTGCAGGTACCATGCCGTGGGGGAACACGGGAGACCACCGGGACTTTGAGCCTCAGAGGCACGACGACGGCTGCATCGAGGTGATCGGCTTCACCATGGCCTCGCTGGCGGCGCTGCAGGTGGGAGGTCACGGCGAGCGGCTGCATCAGTGCAGGGAGGTGGTCCTCAGCACCTTCAAGACCCTGCCGGTGCAGGTGGACGGGGAGCCATGCCGCCTCGCGCCCTCCACGCTCCGCATCTCTCTGAGGAACCAGGCCAACATGGTGCAGAAGAGCAAGAGACGCACGTCTGTGCCGCTGCTCAACGACAGCATTCAGAAAGTGTGCGCAGCCGACCTGCGCCGCCTCTCTGCTCCCCCAGACTCCTTCTCTgtCCCTCACGCCGTCCCCGAGCGTCTGCGTCTGCGTGTGAACCGCATCGGCCTGCAGGAGTACGAGAGCATGCAGTTCGACAAGGAGCGTCTGCGGGACATCTCGACTCCTGTTGGCATCGTGGTGGTGAGAGGAGACTGTGATCTGGAAACCTGTCGATTGTACATTGACAGACTGCAGGAGGATCTGCATCAGGCGCCCTCTACCGGACACAGAGTACACTACCAGGATGAGTGCACAGGTCTGCCCCGGCCCAGTTCTGCACACAGACTCTCACCAAACTGGAGCTTTCTCGACTCAACATCAGCTGACCGCTTCTATCGCATAGACAAAGCTCAGGAGCACCTGCACTTTGTGACCGAGATATGCCAGGATGAGGTTTTCATCCTGGACCACGAGGCCCCAGCGGTGAGCCAGGTCCGGGCCCCAGGGATGCCAGACGTGGTGGTGGAGCCCAGTTCTGGGGTTCCCCTGACCTCAGACGAACAAGCTCTCCTGTCGGCTGCTGTCAAAGGAGACGTCGAGGCGGTGTCGGGCTGCTGCTCGGCTGGAGTCAGCCTGCTGGTGCGGGACTCTACGGGCTGCACCGCGCTGCACCTGGCCGCCCAAACCGGCCACACGGAGATCGTGAGGTTTATTCTGGAGAACGgctcaAAGCTGATGTTGGATTTAACTGACAGAGACACAGGCGATACCGCATTGCACAAAGCAGCGTCCCGGCAGCATGTGGAGGTGTGCAGGCGTCTGCTGGAGGCCGGGGCTTCCCTCAGCAAAACTAACTTCCTAGGAAAAACCCCTAAGGACTGCGCCCTGGAGGCCGGGAACTCGGAGCTGGCGTCTCTCATGGAGAGCCGGGCGGTGGAGGAGCCGGCGGCGCACGAGGACCTGGAGACGGCTGTATGAACGGGCTCACGCGTTTAGAGTCGGGAAGATTTTTACCCACAGAAAGTGGCTGTCTGCACTGCTCCGAGCGCCCGCTCGCACTCGCAGAGAAAGAACGAGAGAGCGTGAGAGGAGAAGGGGAAGGGATGGAGAGCGCCTCGGGCTGAGAGAGTCCTCGGGATCGTGTCTAGCTGTTGTTTTTCCACTGATGTCGCTGTGGggttttagcatttatttattgctcttATTTATTGTAACTATTTATTCAGAGACGGATTGGGTTCGGTTGCATCGCAGGCGTATAAACATGCCAGAGACGGAGGCTGTTATGCGGCGGATGTTGTGTGccaaagacacacagagaggaaAAACATAGAGGAGGATCTTCTTCCGGGAATTTTTTACCATCGGACAGAACCGTGGCGGAGATTTAAAACTCAAAACTACTGACTTTTcacgtttttgtttgtgtgccgTTACAGTGGCGTGATTGTGAAATTATCTTACCATGACGAGACAAGATCTGAGCCATATTCAATGCAATATGAATGGAtgacatttgtgcatttatctatttaatattacattacattaatgtttTGAGACGAGCAAAGGAATcggatgtgttttttttttttcccattgttGGCAGCTGATTGGTTTCTAAAATGCCAAGTCGGTTGCGTTTGACAGATGAATGACTAAACCAAAAGAATGCCGGCGAGAGTTAAGTGTGGCGTTTCAAACATATGCTTAGTCCATGTCACATCACTTATGTGGGGAAATGCCCAGCGACGGGTCTGCATGAAAATCCGGATCACGCTGAGCCTTGGTGAGATCCATTTACATACGAGTGATCTGCTGTGTTATCTagtatcattttaaagcattattgtGCATGGAAATTTTGTTACCTCTCTGGATGTTTCTACCCCTCAGTGGTTATGTAATGAAATGgcattatttctttctctctatctctttttttttttttttaagttatatgaaaaatatgaaattgtaCAATggttgtattttcttttttttatcctctaAAAGATGGGACTACttgaatgttttagttttttttctaatttctaaatatctattttagGTGTGTATGAGGTCAGAGTAGATGTGGAGATGGGGAGATGTGGAGATATCACGTTGCACGAGCTCAAAACTGGGAATGTTTCTCATTAAAAGGCAGTTGGATGGAAAGCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 54670 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 99440 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 137344 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 259133 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 453402 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 130576 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 244801 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 263162 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 358421 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 362815 1788631 ~ 1789276 (+) True G25030
XM_043237823.1 mRNA upstream 690 1369392 ~ 1385823 (+) True creb3l2
XM_043236325.1 mRNA upstream 17768 1366719 ~ 1368745 (+) False ssbp1
XM_043236326.1 mRNA upstream 17768 1366853 ~ 1368745 (+) True ssbp1
XM_043236330.1 mRNA upstream 20443 1352403 ~ 1366070 (+) True c4h12orf56
XM_043236338.1 mRNA upstream 34840 1346185 ~ 1351673 (+) True zgc:162331
XM_043236285.1 mRNA downstream 144 1425960 ~ 1429426 (+) False LOC122342464
XM_043236281.1 mRNA downstream 4802 1430618 ~ 1463236 (+) True rassf3
XM_043236282.1 mRNA downstream 20392 1446208 ~ 1463236 (+) False rassf3
XM_043236688.1 mRNA downstream 37768 1463584 ~ 1468477 (+) True zgc:194209
XM_043236681.1 mRNA downstream 47937 1473753 ~ 1486677 (+) True tbc1d30
TU37077 other upstream 95289 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 720983 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1012431 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1012689 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1091444 293235 ~ 295069 (+) True G24609
TU37269 other downstream 244696 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 358476 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1689692 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1693713 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2013315 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile