RNA id: XM_043236285.1


Basic Information

Item Value
RNA id XM_043236285.1
length 1289
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122342464
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1424627 ~ 1429426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAGTTTCTGTTGAATCATTTGACTCTGAGTCACCTCTAACTTACTCGGTGATGACGTTTTGTTTTGGCCCCGCCCCCAAGCACATAAATACTGTACCGAAGCTTCGCTTTGCTCCGAGAAAACCCCGGACATTGAACGCGGAGTTATGGATCAACAGCACAGCAACGGTGATGCCCGGACGTTTGAGACGGACAGTCTGGAGTTCAAACTCTTGATGGCATACACCCGTAAGAGACGTCCCACCGAAGCCCTCCCGTCTTCACCACAGCCGGATGAAGATCGCAGCAAACCAAAAAGAAAGGGAAGAAAGCCCAGACTGTCTTTCCTCATAAAGTGTATTAAACCACAGACAAATGAATCACCTGTACAGCAGCCAGCGACgctgtcttATTCAGATGATAAGAAAGCGGATGATCTGGAGGACATGGTCTGTGATCTGACAGAGATATCAGACTCTGTGCAGTTTACTCCCTGTGATATAGAACCAGACTCTGATGATGTTGTGGAAAAGCTGGTTGAGCTTCTCAGAGAACATGGGGATAAACTGGACAAGAAGATTAAAGAAGACAAGGTGTTACACGAGAAGCTGCAGTCCTCTCTCACGTACGGCTTCTTCAAGAAAGTGATGGAATCTCTCTGTGGAAGTGTTTCTCCTGATGTGCCTCCAGAGCAGAAAGACCAGAAAGTGAGTGTGGCTCTGGTCTGTGAGGCCACCAGTCAGCTTGTAGGCGTCCACTACCATCCCATGACCTACGTGCTGGGTTTAGGTGCTCAGTATCTGCAGGAAAAATACTCCACGTGGATTAACAGAAACGTACAAGTAGGCATTGGAAAGGTCAGCGACGAATCCAAAGAGGAAGTCCAGTGAGCGGAAGAGCTGCTCTCATCACATCTTTCTCAGGGGCACAGGCACTTTATTAACCCGAAAAAAGTGATTTTCAGTGAACCAAAGGGGATGTAGCTCGCTTTTGTCCTCCACTACACGTTCATGACATccaagagagaaaaagaggtaGTTAATAGTGCCAAGCGTATGTACTCGTACCTCACTGGAAGTGCTACGGAAACTGCCTGGCAGCTGCCTGCAAAAACCTTGAAAACCAGCATTATGTTTAGCTCAACTATTTTTGCAATTCAAAGAGGTACGATTGTACTTTTGTCGTgaaatgaacatatttattttctttagccAGTTGTTGTAGTATttaaaagaatggaaaaaaaaatcttattgatGAATTTTTGCGCTTTAATGTTGGAGAAATAAACTAACTGTGAAAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 94117 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 138887 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 176791 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 298580 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 492849 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 126966 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 241191 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 259552 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 354811 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 359205 1788631 ~ 1789276 (+) True G25030
XM_043236268.1 mRNA upstream 144 1386513 ~ 1425816 (+) True dgki
XM_043236269.1 mRNA upstream 144 1386513 ~ 1425816 (+) False dgki
XM_043236274.1 mRNA upstream 144 1386513 ~ 1425816 (+) False dgki
XM_043236277.1 mRNA upstream 144 1386513 ~ 1425816 (+) False dgki
XM_043236270.1 mRNA upstream 144 1386513 ~ 1425816 (+) False dgki
XM_043236281.1 mRNA downstream 1192 1430618 ~ 1463236 (+) True rassf3
XM_043236282.1 mRNA downstream 16782 1446208 ~ 1463236 (+) False rassf3
XM_043236688.1 mRNA downstream 34158 1463584 ~ 1468477 (+) True zgc:194209
XM_043236681.1 mRNA downstream 44327 1473753 ~ 1486677 (+) True tbc1d30
XM_043236682.1 mRNA downstream 44359 1473785 ~ 1486677 (+) False tbc1d30
TU37077 other upstream 134736 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 760430 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1051878 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1052136 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1130891 293235 ~ 295069 (+) True G24609
TU37269 other downstream 241086 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 354866 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1686082 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1690103 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2009705 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile