RNA id: XM_043236298.1


Basic Information

Item Value
RNA id XM_043236298.1
length 1572
RNA type mRNA
GC content 0.43
exon number 3
gene id si:ch211-214j24.14
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1655036 ~ 1658265 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATATGCGCTTATTTTGAACCGGTTACGGATGATAATgatactgctactactactaataatgctaaaatatataagtatttttattgtagctTGTGtgataaaataacaaacatagATCTTAAACCATGCATATCTATGCCAATCAGGCCATATTCAATTTTTGAAAACGAGGCTGTGTGTCACTGAAGTACAGTGCTTTTAATGGATTGCACTGTTGTTAGGATTGTTCATCTGATGAAATGTAGTTTCCAAAAACTTTAAGTGGACCAAAACTGCAAACGCCAAGTTTGTAAAAACTGCCGCTAAAACTGTTTTCATCAGCGTTTAATTCAATATGGCGCCTGActgttcattaaaatgaaatggaaaatgaaCACAAACCGTATTTGTGCACACGGGATCACTGAGAATGTGATGGAAATCACGTGAATCACAAGGTGGACACTAACTTGGTCAAGCAAACAGCAATGTCACAGAAAGTAGGACGGATCGATGTGTCATGACCCTCAATATAGAACAGAACAAAGgcttcaaaatatgaaaatgtgtaaTTTCGATTTCTTCTAGGATAATACGAGAATGACTCAATGAACCTGTAAAGATTAGTCTGATTTTCAAAGAGGAGTAAAAGGTCTTCCATCCTGTCTAAAGACAGGCAGTTTGCAGGACCCTCCCTTCCCCAGGATCGAACCTCAAGCCTGGAGGAGAGCGGCAGTGGGTCTGGCCCCTGGCAGACTGCTAGTCTAACTGAGTCCTGGGCATCTGTTAGCGACATGGAGCCAGAGCTTGGAAGTCTAGAGACCAGCGAGATGGTCCTAGTTCAAGAGGACCGCAGCAAGAACCACTTCTCCACCTCTGAGATTATCCACCTAGACGCGGAGCTCCATCAGAGGGTGGAGTCAGACGAGGAGGAGCTTCAGAGCAGCATGCTGAGCATGATTAACAGTGAGCTGGAAGAGATTGGAGCACTTCCTGCAGAATCAGATCTTAGGCCTCCACAGACTATGGAGCTCCTGATGTGTGTGGAGGAGCCAGTCGTGGAGGAATTTGATGCAGAGTTGGCTTCTGAGCCGGTTTTCACTCACTCTCCCCTTCTGTCTGAGCCTTTAGATTTCACACTGGCTTCAGTTCCCATACCTGAAATCATCTCCCAGGTTTTAGATCATCTCCCAACCCCCACAGTCACTGTCTCAGAGGATCCTCATGCCTCTGAATCAGAGTCTATTAATGCACCTAGTGTGTCAGCGTCATCTTCAAAAGAGGTTGTTTCAAAGGCAGACCCCCTTTCAGCCGCACCCTTTGAACTCCCAGTGCTGCTGGTTGGTGGCGCCGCCCTGGTGGCCGTAGTGGGAATACTTACATATACCCTGACTAGAAAGTAGCAAGACTGTGTAATAGTAATGGTTTCGAATTGTACAATAATTCAACAGATTGTATTATTGACTAtgtgatataaaaatacagtgttattaaatattcttatttgtcttatttacatatacacacatacaagtGACGAAACAGTTTGTGGACGATTCACctcaaaaatcaaaataaaaaaatttattgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37323 lncRNA downstream 59748 1594720 ~ 1595288 (-) False selenoo2
TU37317 lncRNA downstream 72422 1580480 ~ 1582614 (-) False LOC122342802
TU37318 lncRNA downstream 77311 1577201 ~ 1577725 (-) True G25098
TU37229 lncRNA downstream 78320 1576061 ~ 1576716 (-) True G25028
TU37228 lncRNA downstream 79617 1570293 ~ 1575419 (-) True G25027
TU37348 lncRNA upstream 2340 1660605 ~ 1661388 (-) True G25124
TU37349 lncRNA upstream 4080 1662345 ~ 1662607 (-) True G25125
TU37350 lncRNA upstream 4808 1663073 ~ 1663900 (-) True G25126
TU37351 lncRNA upstream 7573 1665838 ~ 1666137 (-) True G25127
TU37364 lncRNA upstream 30093 1688358 ~ 1688894 (-) True G25133
XM_043236318.1 mRNA downstream 210 1653598 ~ 1654826 (-) True ccdc167
XM_043236317.1 mRNA downstream 26381 1625295 ~ 1628655 (-) True si:ch211-214j24.10
XM_043236315.1 mRNA downstream 33155 1618977 ~ 1621881 (-) False apex1
XM_043236314.1 mRNA downstream 33177 1618977 ~ 1621859 (-) True apex1
XM_043236881.1 mRNA downstream 36741 1609360 ~ 1618295 (-) True zgc:113263
XM_043237973.1 mRNA upstream 8380 1666645 ~ 1670146 (-) True LOC122343486
XM_043237974.1 mRNA upstream 16937 1675202 ~ 1678612 (-) True LOC122343487
XM_043237568.1 mRNA upstream 22684 1680949 ~ 1683573 (-) True rad51ap1
XM_043237838.1 mRNA upstream 26864 1685129 ~ 1687279 (-) True fgf23
XM_043237589.1 mRNA upstream 35286 1693551 ~ 1697391 (-) True fgf6b
TU37319 other downstream 229 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 36738 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 36738 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 584940 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 721928 908946 ~ 933108 (-) False pik3cg
TU37444 other upstream 243578 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 384688 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 644062 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 646081 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 1362797 3021062 ~ 3021457 (-) False LOC122342805

Expression Profile