RNA id: XM_043236302.1


Basic Information

Item Value
RNA id XM_043236302.1
length 4947
RNA type mRNA
GC content 0.48
exon number 19
gene id btbd11a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5580502 ~ 5711019 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTGCTGTGATTGTTTCTGCCGGGGTCTCCACTGCCTCCATCCTGCTGATGAGGGTCTGGAAGCGCTTGTACGTGAGAGGAGACTGGCCTCCATTAAGCTCGATTATCCTGAAAGACAACAGTCCACCACTTACAGGCTCAGTTTTGCAGAACTATTCATGCTCTTTGTTGGAAACGacatgtggGCAACAAGCAATCATGGGAGAACATGTGAAGGAGAAATCTCAATTAGGAAGAACAACCTCTGCCACTGCTGAGGACTGATTTATTCACAGGCGTTGCATATCTAAGGTGTATTGAGCCTGCCGGACAGTCTGAACCTGCACCGTGACCAGCAGCGAGCAGGGAAATCAGGAGAGGGCCATGCATATAGCCAGGCTGAACTCCGCACCATTGAACAGTCCCTCCTGGCAACCCGCGTGGGGAGCATCGCAGAGCTCAGTGACCTGGTGTCCCGTGCCATGCATCACCTCCAGCCTCTGCACATCAAGAACCCCAGCAACGGAACGCCTGTACACCAGAACCGCACCGGCACTGTGCACTGGGAACCGGAGGCGCTCTACACGCTCTGCTACTTCATGCACTGTCCTCAGATGGAGTGGGAAAACCCTAATGTTGAACCCTCCAAGATCACCCTGCACACTGAGAGGCCGTTTCTGGTGTTGCCTCCGCTGATGGAGTGGATCCGGGTGGCCGTGGCCCATACAGAGCACCGCCGAAGCTTTTCTGTGGACAGCGACGATGTTCGACAGGCAGCACGACTGCTGTTACCTGGGGTGGACTGTGAGCCACGGCAGCTCAAAGCAGACGACTGCTTCTGTGCCACACGGAAACTGGACGCTGCATCCACAGAAGCCAAATTCCTGCAGGACCTGGGCTTCCGGATGCTCAACTGCGGACGAACTGACCTGGTCAAGCAAGCAGTCAACCTGCTCGGGCCAGATGGCATTAACAGTATGAGCGAACAGGGCATGACCCCTCTCATGTACGCGTGTGTCCGTGGGGATGAGGCCATGGTGCAAATGCTGCTGGACGCTGGAGCAGACATCAACAGTGAGGTGCCCAGCTCACTACACAAGCACCCCTCAGTTTATCCTGACACCAGGCAGGGGACTCCACTCACATTCGCCGTGTTACACGGACACGTCCCTGTCGTGCAGCTTCTGTTGGATGCCGGAGCAAATGTGGAGGGAGCGATTCAAGATGGCGCGGAGAACTACACAGAGACGCCTCTACAGTTGGCGTCTGCAGCAGGCAACTTTGAGCTggtcagtctgcttctggaaaGAGGAGCAGACCCTATGATTGGCACCACCTACCGCAATGGCATTTCCTCTGGTCCTCTTGGTGAAATGAACTCGTACAGCCTGGCAGCATCACATGGACACAGGAACGTGTTCCGGAAGCTTCTGTCCCAGGTGGAAAAGGACAAGGGGGACGTGCTGTCTCTGGAGGAGATGCTAGCCGAGGGCTCCGACACCGTAGAGAGGAGAGCGCCACAGAACGAAGCCACCCTCCGGACAGGCAAGGCCAAACTAAGGGCCCTCCGCGAGGCCATGTACCACAGTGCCGAACACGGCCATGTGGACATTACCATAGACATCCGCAGCCTGGGCGTACCCTGGACCCTGCACACGTGGCTGGAGTCCCTGCGAACGTGCTTCGTGCAGCAGCGACGGCCGCTGATCCAAGGCCTGCTGAAGGACTTCAGCTGTATAAAAGAAGACGAGTACACGGAGGAGCTCATTACACACGGACTGCCACTCATGTTCCAGATCCTTCGAGCCAGCAAGAACGAAGTGATCAGCCAGCAGCTGTCAGTCATCTTTACCCAATGCTACGGGCCTTTCCCAATCCCTAAACTCACCGAGATCAAAAAGAAGCAAACGTCTCGATTGGATCCACACTTTCTCAATAATAAAGAGATGTCTGACGTGACGTTTCTGGTTGAAGGAAAGCCCTTTTATGCCCATAAAGTGCTGCTCTTCACTGCCTCTCCAAGGTTTAAATCTCTGCTGTCTAACAGACCAGCGGCTGAGAACACATGCATCGAGATCAGTCACGTCAAGTACAACATTTTTCAGCTGGTAATGCAGTACCTCTACTGTGGCGGCACTGAGTCACTGCACATCAGGAACACTGAAGTGATGGAGCTCCTGTCTGCAGCCAAGTTCTTCCAACTTGAAGCTCTCCAAAGACACTGTGAAATCATCTGCTCCAAGAACATCACAACTGACACCTGTGTGGACATTTACAAACATGCCAAGTTCCTGGGGGCCCTGGAGTTAGCAGCCTTCATCGAGGGCTACTTCCTGAAGAACATGGTGCTCCTGATCGAGCTGGAGAACTTTAAGCAGCTGCTGTACGAGGTTCCCGCGGAGAGCCCCAGCCCCGGCCCGTCCTACGACGTCCTCCACGACCTGGAGAGAACCCTGGCCCTGCGGATCCGCTCCATCCATCTCTCCACTTCCAAGGGCTCCATCGTCTGACGCTTTCACCGAACTCACACCAACCGCTCCATGCTCCAGGCTTTCATCGAGAGCTCCATTCTTGTGTGCCAACCGGTCGGAAACATTTGAAACATCACCGCCGTCGTGGCCAGCACCTCTCTCCTGACGGGATTGCATTTCACTCCACAGCGTCGCGGAAACGTCAGCCTGCTTAACTCATACCATTCCAAGGGCTACGTTTACGTTGTGGAAGTACTGTTCTGACAACATTATGATGCCCAACCAATGTTAGTGCCCAGGGAAACCGTGGCTCCTGATGTCATTACTGCCTCGGCGACGCATGCAGATGGATCCGGGTTCATTTTTAGGTGGAGCTGTCTTAGGGAACGACGGTCATGCTAGCTGCCGAGGACGGTTTTAGTAACACACACAAGTATATATAACTCTCCAATTGACGTAATATTGTTAGCCTGCCTTCTGAACCTTAAATTTGTGTAACATTCCCTCCAAGTGACACTTAACGCTAAGCAAACGATGCATGTTCAGTTAGGCGATGCTGCCATCAAGTTTCCCCAGCCATCTGTGTTCGAGTTGGACAATTACATCCACTAGGTGTAGAGTTTTACAAAGGAGGTGTTTTGTATACTTAATACTCACATCCAACTACAACTTTTGGTATTTGTGTCACTGAACAATAATATGCCAGCTGTTGACATCCTAGCACTTGTGTTTAACGCTTTGCGGTTTTAAGGAATAGAGATTTGCTACCTTCAGTCATTTGTAGACTGATCCAACACAAATTATCCAACCAATGGTAGACTAAACATGTTGCTTTTAGTTTATACGTCTCACCGAAGTTCATTGTGTCTGCTAGTTCTGAGCTATTCGTTTTAAAAACCCTCTACTTAAAGCACTGTGCTTAGTACACTTCAAACTGAGCAGCTGAGGTCGCGCAACCAACGATCTGTGTCGAATGAAATGCATGGATCCTGTCTGGaactaatgtaaaatacaaaaaaaaaaagctcattttcctttttgtggATGCGGATTTACGCCCTTTGTGCAGGACTGTACTGTCCTTTGAGGTCTTCGTTGCTTGCAAGTCTGTCGAAATTGTGCGTTATGAGAGATGCCATTGCACTGGTCACCACCTTCGTGAGCCCATGTACATATTCCCGGTCTTCACCTGCTGCACTGCTTTCGTTCAATGTGAAAAATGTGAAGCCGTTTTACGTGTGCATGTTCCGGTTTTTCCCGTGTTTGTCAGTAACCCTTCAGGATATTGGTAAGTTGGAAACTGTACTGGATGTATGGTGTTACCGGCAGAAGATTTTGTTGGCCAGGCTGAACCCAAAGTAACAGATTTTGAAGTATACAAGGCATTTCATCCAAAGATTACGACATGAGAATTTCTACCAAATACTCTATTTATTGGATAATATCGGTACGCATCTTACACATGCTGGTAGTGCTGTCCAAGAGTCCTGTTTTGGTTAGAGATGTGTTGTATGATTTCTATTTCATGTACGGCAATGAAATACATTCCTCGTGTAACATGAAAGGTTGGATTATTACTAAATTTACCCATTGAAATACATAGTTTATTGATATGTAGCTGACTATGGAATAACAATATCATGatgcaaataatttaaaactgtgaagatacatttattttaaagaaacttaGCATAGTTACTTTATTTTCTTACGAAGTACGTTTATTGTGAAATCCCTGTCTGCTATTTTGTGTAACAGAGATAATAAGTCATAACTGTATCTATGTCTTTGCATTTGCAAAATGCCATTGCTTTGATAAGCTAACACAAAAAACGGACAAGGATGAATCACCTTGGTGTAATTTTATTAAAGATCGGACCTGCTTATTCGCAATGTCTTCAGTAAACCCCACCATCTGTGTTCGCAAAACTGAATTAGTAAAAGCAATACTTGGCACAAATATGTCCATGCAAGGTTAGTTTTCTTGTCTGACCTATTACTTGTGCTTAGCATGGATGCTGCTCCATGTAGCCAAACGTAAAGCAGAGGCCAATGTCATGAAGTGTTTGTAAAAGCTGTACACCTCCTCACATAAAAAAGAGACTTGCTCTGTGTTTCTTGGCTTCAGCTTTTTCTGCTTCAAGGCTGTTCGACTTGCTTTAACTTTCCACTAATGCACACCTTTTGACATGTCTACTCTCGACAAAAACCTGCATGCTTTGGCTGGATCAGAGTTTAACGGAATTtgtttgatattattatttcaccTCACTGAAACATTGTACATTGTACAAAAGATATATAGAGAAATATCTATAGAACATGGTGTAAATATAAGGGATGTGGTTGAGTTTAACAATCGAAAAAAACAAGAATGTTACACTTGTGCTGCAGTACAGTTGTTCAATGACATGCATTTGTGTACAGTCAATAGAAATGACCACGATTGACCACTGTGTTGGGTCGTCATTAAATTTCTGTGATAAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39098 lncRNA downstream 7070 5570544 ~ 5573432 (-) True G26361
TU39094 lncRNA downstream 11130 5559772 ~ 5569372 (-) False G26359
XR_006250579.1 lncRNA upstream 4120 5715139 ~ 5716435 (-) True LOC122342480
TU39168 lncRNA upstream 17038 5728057 ~ 5728729 (-) True G26407
TU39263 lncRNA upstream 195736 5906755 ~ 5913538 (-) False G26462
TU39264 lncRNA upstream 202634 5913653 ~ 5914700 (-) True G26463
TU39265 lncRNA upstream 206252 5917271 ~ 5917890 (-) True G26464
XM_043236799.1 mRNA downstream 1922 5575657 ~ 5578580 (-) True LOC122342741
XM_043236196.1 mRNA downstream 30854 5540289 ~ 5549648 (-) True podxl
XM_043237090.1 mRNA downstream 104320 5454172 ~ 5476182 (-) True net1
XM_043237091.1 mRNA downstream 119281 5454172 ~ 5461221 (-) False net1
XM_043237942.1 mRNA downstream 345446 5224238 ~ 5235056 (-) True prmt8b
XM_043237925.1 mRNA upstream 9397 5720416 ~ 5724961 (-) True si:dkey-222f8.3
XM_043237926.1 mRNA upstream 9397 5720416 ~ 5724906 (-) False si:dkey-222f8.3
XM_043236751.1 mRNA upstream 209626 5920645 ~ 5937372 (-) True braf
XM_043236752.1 mRNA upstream 209626 5920645 ~ 5937367 (-) False braf
XM_043236019.1 mRNA upstream 227659 5938678 ~ 5940015 (-) False mrps33
unassigned_transcript_303 other downstream 815335 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 815562 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 822675 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1313007 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1976232 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 6027 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 7993 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 18999 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 18999 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 18999 5730018 ~ 5736946 (-) False G26408

Expression Profile