RNA id: XM_043236303.1


Basic Information

Item Value
RNA id XM_043236303.1
length 3402
RNA type mRNA
GC content 0.49
exon number 14
gene id cry1a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5704481 ~ 5715620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTTAGTCTACCGATTGAATTGCATGGCTGAAAGTCTATGGAACCTTCTCCGTGGGAAAATATTTACAAGTGGACACAACGTTGGGGGAAACAACCGAAACACGCCGAATGCCTAATATGAGATCGCACTTCATGCGGGACATCGCTTTATTTTGCGACAGCTGCCAGTAACGCGGTCACGACGGGCTCGGTccaacattaatatttacataatcgCTCTGATTTAGGGCTCGCACGTCTCCGAATCGACTTCATCTGGAGGACCGCGCGCGCCGAGAGCCAAGTCGACTCGCAGACCAACTTGCTACACAGGCGAGATctaaaatatgtacagtattCTTGATTATTTTGGATAATTCGGAAAAAACAAGTTATACAACAGGGAAGTGCACTTTGCGTCGCGTCCTGGTCCTAAAGCCGGTCGTGTATTCGGCAGTTGCGCGGATAGCCAGCGCGCGCTCCAATGCTTCAACTGTGGTCGTGTTCCAAATCATCAGACATGAAGATGGAAAGTGTTTTGTTAGAGCAAggctaataatttttttttgccggATATAAAGCAGAATCAATCGAACGCGCGTGCATTAGTGACTTTTATTAGACAACTTGTCGTTTTTTAAGCTTTTGAAAGCAGTTTCTTCTTTGAAGAGCGTAAGTAAGGCAACGCGGAGGAGGTCTGTATCGAAGCACCCCAGCATACTACAAACGGTTGAAGGGACTTAAGTGGAGTAATGGTGGTAAATACGGTCCACTGGTTCAGGAAGGGCTTGCGGCTCCACGACAATCCTTCACTCAGAGACTCTATCCAGGGAGCGCACACTGTCCGCTGTGTGTACATCCTCGACCCCTGGTTCGCCGGATCCTCCAACGTTGGGATCAGCAGGTGGAGGTTTTTACTGCAGTGTTTGGAAGACTTGGACGCCAGCCTCCGCAAACTAAACTCACGACTCTTCGTTATCCGCGGCCAACCCACTGATGTCTTCCCCAGGCTCTTTAAGGAGTGGAACATTACTCGTCTCTCCTATGAGTACGACTCAGAGCCATTTGGAAAGGAAAGAGATGCGGCCATTAAGAAGCTGGCCAATGAGGCAGGCGTGGAGGTGATAGTTCGCATCTCTCACACGCTCTACGATCTGGACAAGATAATCGAGCTTAATGGAGGCCAGTCTCCTCTCACGTACAAGCGCTTCCAGACCCTCATCAGCAGGATGGAGGCAGTGGAGACCCCGGCAGAAACAATCACAGCAGAAGTCATGGGGGCGTGCACTACTCCGGTTTCTGAAGACCACGATGAGAAGTTTGGTGTTCCTTCTTTGGAAGAGCTTGGCTTTGACACAGAAGGTCTATCCTCAGCTGTGTGGCCTGGAGGAGAAACAGAGGCCCTCACTCGTCTGGAGAGGCATCTGGAGAGGAAGGCTTGGGTGGCCAACTTTGAGCGTCCAAGAATGAATGCCAATTCGCTGTTGGCCAGTCCCACTGGCCTCAGTCCATATTTAAGATTCGGCTGCCTCTCCTGTCGCCTCTTCTACTTCAAACTCACAGACCTCTACAGAAAGGTCAAAAAGAACAGCTCACCTCCTCTGTCCCTTTATGGCCAATTACTGTGGCGTGAGTTCTTCTACACGACTGCCACCAACAACCCCCGCTTTGACAAGATGGAAGGCAATCCTATTTGCGTCCAGATCCCGTGGGACAAAAACCCAGAGGCTCTGGCCAAGTGGGCTGAGGGCAGGACAGGTTTCCCCTGGATCGATGCCATCATGACCCAACTGAGACAAGAGGGCTGGATCCATCATCTGGCCCGACACGCAGTCGCTTGTTTCCTCACCCGCGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAAGTCTTTGAGGAGCTGTTGCTGGATGCAGACTGGAGCGTGAATGCAGGAAGCTGGATGTGGCTGTCCTGTAGCTCCTTCTTCCAGCAGTTCTTCCACTGCTACTGTCCCGTGGGCTTCGGCCGGCGGACAGACCCCAACGGAGACTACATACGGCGGTATTTGCCAGTGTTAAGGGGTTTCCCAGCCAAGTATATCTACGACCCCTGGAATGCTCCTGAAAGCGTCCAGAAAGCAGCCAAATGTATAATTGGTGTACACTACCCCAAACCCATGGTGCATCACGCTGAGGCAAGCCGCCTCAACATAGAGCGTATGAAACAGATCTACCAGCAACTGTCCTGCTACCGTGGTCTTGGACTGCTGGCAATGGTGCCGTCCAACCCTAATGGAAATGGTGAGAATTCCACTACCTTAAAGGGAGATGCAATCAAGGAAGTCACTGCACCTTCAGgcTATCAGATGCCGCCCACTTCTCAAGGTGAATGGCACGGCAGGACGATGGTTTACACACAAGGAGACCACCAGACAAGCAGCAGCATGCCACCGCAAGGTTTTGCGGGCAACACTAGTGGCACAATGTGCTACAGGCAAGAATCACAGCAGATATCTGGACCTGCCGTACAGCCAGGACGTGGGCTACACAGCAGCAGcatccagacctctggaaaacGACACAGCGAGGAGGCTGGTCCTGTCACAGGCCCAAAGGTCCAGAGGCAGAGCAGCTCTTAAACATCAGaAACGGTTGATGCAAAGTGGTCTGCACGACTTCGCAGAggcctgatttttttttgtttgcaccTTTTTCCGAGTtgttatgttttgcatttttacaaagGAAACCAAAATCCCACTGACGGGAGCGATTGAAGGGAGTGCATGATTCTCTCTATAAGCACATCAACACATAGCACTTCGAAACAATCAGACTGTACATTATCACAGGGACTTCACCCAAGCGGTCACCAACATCCTGACAACATTGGAATTACGTTGCGGCTCTGTGATCTGCACAGCTGCAATGTTCTGTCAACGTTGCGTTCATGTTTGTACTGTTTGGGACtaaatttttatgtatataaggATTTGATGAATACTcacatacaaaatgtaaatatttaatattgtatgtgCTTTCTCTATTTCATGTAGTCATAGACCcattgatatatttttgatataaagaATTATTGTGGATCAATTTTACTCTCTtctttatgaaaacattttaaagcatttgtagACTGTCCATGCAGTACACTACTAAGCCTCTCCTTGGGCTGCTTGCTTGCACTACGTTTTTCTTGATTTCTCCTTTGCTTGcctgttctctctctgtctctaccACAAATGTTTGTGATCGCTCTCTCTTTTCAGATTGACATCTGTCTTGTACACCTTCTCAGTCCCTGTTTACTCCTCCTTTCTATCTGGGTGTCTTTCCATTGCTGTAAACTGTATGAAAACTATAATTCACCGCCGTGTTTCTCATCCTCTCACAATGTGCTTgtttaataaagtgtaaatgtaaa

Function

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39064 lncRNA upstream 130762 5573503 ~ 5573719 (+) True G26342
TU39059 lncRNA upstream 133273 5563371 ~ 5571208 (+) True G26337
TU39062 lncRNA upstream 150700 5553386 ~ 5553781 (+) True G26340
TU39054 lncRNA upstream 184625 5519474 ~ 5519856 (+) True G26334
TU39053 lncRNA upstream 185324 5518933 ~ 5519157 (+) True G26333
TU39128 lncRNA downstream 11446 5727066 ~ 5727271 (+) True G26387
TU39129 lncRNA downstream 12585 5728205 ~ 5736908 (+) False G26388
TU39130 lncRNA downstream 12585 5728205 ~ 5736908 (+) True G26388
TU39131 lncRNA downstream 12585 5728205 ~ 5733645 (+) False G26388
XR_006250586.1 lncRNA downstream 12688 5728308 ~ 5730572 (+) True LOC122342507
XM_043236195.1 mRNA upstream 164362 5521753 ~ 5540119 (+) True mkln1
XM_043236456.1 mRNA upstream 286494 5412647 ~ 5417987 (+) True asb13a.2
XM_043236455.1 mRNA upstream 291917 5410196 ~ 5412564 (+) True asb13a.1
XM_043236453.1 mRNA upstream 294439 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 303568 5398333 ~ 5400913 (+) True ankrd16
XM_043236305.1 mRNA downstream 3389 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 134868 5850488 ~ 5862313 (+) True LOC122342465
XM_043236976.1 mRNA downstream 146987 5862607 ~ 5898827 (+) True LOC122342837
XM_043236202.1 mRNA downstream 157039 5872659 ~ 5876129 (+) True LOC122342429
XM_043236201.1 mRNA downstream 161914 5877534 ~ 5881277 (+) True LOC122342428
unassigned_transcript_304 other upstream 305514 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 312855 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 761746 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 761746 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 1075582 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 66324 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 134809 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 177365 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 673217 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1509901 7225521 ~ 7227437 (+) True G26692

Expression Profile