RNA id: XM_043236307.1


Basic Information

Item Value
RNA id XM_043236307.1
length 3250
RNA type mRNA
GC content 0.42
exon number 5
gene id si:ch211-214j24.15
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1629593 ~ 1634607 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAAACACACCTAACGATGATTCACTCAGTCTTGTGTATTGTCACTGGTAACATAACCAAAATATTGCTCCTATGCATAAAATAAACCTGTATGACCCATTATGGCCTTAAAAGGAACTTCTCAGTATCAGAGAAATGTGAAGCATCTTTTCGAGTTGCGGATCATCCTTCTTGGAGGTCGAAATTCTGGAAAGAACCTAGTGGGAAATACTATCTTAAACCAAGAGGAGTTTGTCCTCCATGAAAGGACCACATGCTTGAAAAGAAAGGCTGAGGTACAAGGGAGAAGTGTGACAGTGGTGGATACGCCAGGTTGGTGGTGTGACTTCTCAGCACAAGACACACCAGAGCTGGTCAGGAGGGAAATCAGACACAGTGTCTCCATATGCCACCCAGGGCCTCACATCTTTCTCCTTGTGGTGAAAACAGACTCTGTGTTCATAGAAAAGAGGAGGAGAGCCATAGAAGAACATGTTGAGCTTCTCGGTGAGGATGTTTGGAATCACACTATAGTGTTGTTCACAAAGGGCAAAAATTCAGGGAATAAATCATTTGAGGATCATGTTCAGGCATCAGGTAAACCCCTCAAGTGGCTCCTGGAGAAATGTAGTGGCAGGTTTCATGTTCTTGATACCCAGGAAACATGCAATCCCACCCAAGTAATGGAACTCATGGGtaaaattgacaaaatgttAGCGGAAGATGAAAGATACCAATTTGAAATGGATGTAAAGACTTTACAGGAGATAAAGGACAGGAAGAGGGAAGTGGAGCTTAAGGCTTATAAAAGACTGATGAATATACAAAAACAGAGATCTACTCTCAAGGTGCACTCATCTCATCAACAAAATATAAGACTCATCTTGCTTGGAGCAAAGGGATCAGGGAAGAGCTCAACAGGAAACAGCATTCTAGCCGCAGGAAGTGACCTAAGGTTTAAAGCAAACAAACGGACCACACAATGCGTGAAGGAAACACTGACAGTAGCAGGAAGACAAGTAACAGTAGTAGACACACCTGGCTGGTGGATGAACTACTTTACCCAGGATTCTTCAGCTTTTGACAAAGAGGAAATAGTCAAGAGTGTGTACTTGTGTCCACCTGGTCCTCACATTTTCCTTTTGGTGGTAAGGTTAGACAGGTCATTCACAGAGATCTACAGGAGAGCCATTGAGGAGCATGTGGAACTCATTAGTAAGGATGTTTGGAATCACTCTGTAGTGCTGTTCACCTTTGGGGACTGGCTTGGTGAAACAACTATAGAGCAGTACATTGAAAGTGAAGGTAAAACACTCCAGTGGCTTGTGAAGAGATGTGGAAACCACTACCATGTGCTAAACAACAAGAACCTTGGGAATAAGTTCCAGATCACAGAGTTACTGGAGAAGATAGAGGAGATGACAGCAGGAAGCCACTTTAAAACAGATGAGAGTCTTTTTAAAGAGATGAAGAGAAAATggcaagaagaagaaaacagggCAAAGATCCGGTATGAAAATGTGCTGAGACAAAGACAAAGCTTGGGCGCTTTAAAGAGTAAAGTACACTTGCCCCTAGCTATAAGAGTATTTCTTCTGGGCGGTAGACACTCTGGTAAGACATCTTCTGCAAATTGCATTTTGGGTAATGATGGACAAGAGGCTGACAACCAAAACCTAACAAGAGGTACTGTTATACACAAGGAGACAAAAATTGAAGTCATGGACACACAAGGCTGGACAACTGAGTGTCCAGATATCGCAGAGTTCAGAAGACAACTTCTCCATGACTGGGTTTCTGGTTCAGCCAGTGGAATCTGCACTCTCCTGCTGGTTGTCAATGCCAGTTCATCATTTACACTAAGGAACCTGAAAGCAGCTGAGGACCATCTGCATGCTCTGGGAGGGAAAGCATGGATCAGCACTGTTGTGTTGTTCACACATGGAGACTGGCTCTGTGATGTCAGTGTGGAGCAGTATATTGAAAGAGAAGGAGATGCACTTCAGACGCTGGTGGAGAAATGTGGAAACAGATACCAGGTTTTCAACAATAAGATTAAAGACAATGGCACTCAGGTCACAGAACTGATGCAGAAGATAGAGGAGATGGTGTtggaacaaataataaataatgcaaaaaatagaGAGAATATTCAACGACCTTTGGTAAATGATGAATTAAACTTTGGTGGGAAGGTACAGACTGGGGAAATACAAAAGACAGCTCTTAGAAGCTCTACAAACATCCTTCCTGGTGATACTAACATTCGAGGAGAGCATGAAATGATTGAGATCTCTGAACATTTACTCTCATCTACATCTACAGAACCAAAAATTACCACCACAGCCTTCAGCCTTTCACCGAATGAAAATCAAGCAATGGCCTGCAGGAGTATACGATTATCAAATTGGACCTCATTACCCAGTAACATTCATCAAAGGCTAGTATTGGTGCTCAATACCTCTGAATGGTTTCACCCAAATGAACTATGGATTGGTGTAAATAGGACAAATGGGCCTGAAACTGGTTCTCTTGCTGCATTTCATGTTTCAACAACTGAACAGGCAATGAATGTACAACAATTATTCAGGAGAGAATCACAGGGGGAAAGGTTTTGTTGGCCATCCCTTCCATATTACTACAGGAATACACCGTACACAGCTCAAACTGCAAAAGAAAGAGCCTTCATGGATTTTGTCCAATCAGAGAACCTGCAGAAACTAATTGACCAATGGGGCAACAGTAACATTGATGAGCTGGAGGCATTTATAGATTCTTATTTTGAGATGGTGTGGCAAGAGGCTATGAATGAGCCTAAATGCAGCAGCATGACTCCAACCGACTCTGAAAGTTCAGGCATCACTGAGAACGATCAGGGACATCTGGCCTCAATTGACAGGAAACTGTCAAAGCTTGACATCTTGGAGGGAGTACAAAGAGACTTGCAGGAGCTGAAGCAAACAATCAAGCACTGTAGTAGAATATTTCAGGAAATGAAGGACAGAGGTAAAGAGACACACGTCTCCAGCCAACCCTCTGAAGCAACTGCATCAGCAGAAAGTGAGGAAATGGGTCGATCAGTTGAAAAGTGAATGCCACagaaatggcaaaaatacaaatgtatttgtcaTGTTGGGTCATGACTTCCCTGTTTAAAGTGTAACAAgatgtgcatttttttgtctgccagaaaaaaagaaagctaaataaaaacgCAAGAGTGGgtgaacaaatataaataaatcctttcattaaaaatattataataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37142 lncRNA upstream 71815 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 297750 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 342520 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 380424 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 502213 1112895 ~ 1127380 (+) True LOC122342413
XR_006250791.1 lncRNA downstream 36010 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 54371 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 149630 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 154024 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 196071 1830678 ~ 1830968 (+) True G25086
XM_043236316.1 mRNA upstream 4702 1622079 ~ 1624891 (+) True LOC122342485
XM_043236885.1 mRNA upstream 20451 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043236887.1 mRNA upstream 20451 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043236888.1 mRNA upstream 20451 1604992 ~ 1609142 (+) True si:dkey-14d8.1
XM_043237041.1 mRNA upstream 54179 1568264 ~ 1575414 (+) True cd9b
XM_043236313.1 mRNA downstream 570 1635177 ~ 1653759 (+) True snap91b
XM_043236308.1 mRNA downstream 572 1635179 ~ 1653759 (+) False snap91b
XM_043236309.1 mRNA downstream 573 1635180 ~ 1653759 (+) False snap91b
XM_043236310.1 mRNA downstream 573 1635180 ~ 1653759 (+) False snap91b
XM_043236311.1 mRNA downstream 573 1635180 ~ 1653759 (+) False snap91b
TU37077 other upstream 338369 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 964063 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1255511 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1255769 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1334524 293235 ~ 295069 (+) True G24609
TU37269 other downstream 35905 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 149685 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1480901 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1484922 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1804524 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile