RNA id: XM_043236310.1


Basic Information

Item Value
RNA id XM_043236310.1
length 4548
RNA type mRNA
GC content 0.45
exon number 23
gene id snap91b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1635177 ~ 1653759 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCGCTTCCCTTTAAGAGTCCGGTATGCGTCACCTGACCAGGTCCACCGACCACCGACGAGGCAGGACTGTAACCTGCATTACTAGAAAAATAAGCAACTAAATAGCTAAGATCCACACGATATAGCACTGAAACGCGAAACACACTTGTCTTCAACCTCCCGCCATTGAAACGACTGGAAAGAGACAcgtcatcatcaccatcatcctCCGACCGGACTCGAAGGACACACGGGCTGCGACCGAATATCACCGAGGCTCCGGAATCCCGAACAGCTTTATAGTAGAGGATTAATCGACGGAGCGTTTGTAAAACTCGTTTTTAGGTGTTTGTTTAATTCATTACGTCGTAAAAAGAACCGGTTCGTCGCAAAACGCTCTGTAATTTCTGTTAGATGGGGTTTCGATACGTATGATAACCAAAGGTGACGTTTTAACGTATTAATTTGACCATTTATTTCACACGAGAGCCAGAAAACAGCTCGTCGTAGGGCGTTACGTAATAGAGGCATTATCCAGGGTGCTGAAACCAACCCATGCTAGACGCCTACGAGGGATTTTTTTAACGGTTCAGTtgagaacatatatatatattttttgcttttaaaaacgcAAATTCATCCGATCCGCCTGGAAACCGAAACGAGGAATTGACATTGACAGATTCGAGAGAGCCACCTTGGATTCCGTGTCTTTTTTTGTCGGCGAATATCATATGCATTTCGTCTGTCCTTCCCCCTGAAGTTGATTCTTGAGGTGGTTGTCGACGCTACCGGGAGAAAATGTCGGGACAGACTCTGACGGATCGCATCGCCGCGGCGCAGTACCAGCTCACCGGATCCGATGTGGCTCGTGCCGTTTGCAAAGCCACCACGCACGAGGTGATGGCGCCCAAGAAGAAGCACCTGGATTatCTGATCTCAGCCACCAATGAGACAAATGTGAACATCCCCCAGATGGCTGACACACTATTTGAAAGAGCCACTAATGCCAGCTGGGTGGTCGTGTTTAAAGCTCTAACCACGACCCACCATATCTGCATCTATGGCAATGAGAGATTCATCCAGTATTTGGCCTCAAGGACTTCCCTGTTTAATCTCAGCAACTTTATTGACAAAACTGGCTCCCATGGCTATGACATGTCTACATTCATCAGACGATATGCACGGTACTTAAATGAAAAGGCATATGCTTACCGTGCAATGGCCTTTGACTTCACTCGAGTCAAGAAGGGAGCTGACGGAGTGATGAGGACTATGGCTCCTGACAAGCTTTTGAAGGCCATGCCTGCCCTTCAGACACAAGTAGACACACTGCTGGAGTTTGATGTTCATCCTAAAGACTTGAACAACGGCATCATAAATGCAGCATTCATGCTTCTCTTTAAGGATCTGATAAAACTCTTCGCCTCCTACAATGATGGCATCATCAATTTATTAGagaaatatttcaaaatgaagaaGTCTGAGTGCAAGGATTCTCTGGACATTTATAAGAAATTTCTGACCCGGGTGACCAAAATTGCAGAGTTCATGAAAATTGCAGAGCAAGTAGGAGTGGATAAGAATGACATCCCTGACATCTCTTATGCTCCCAGCAGTATTCTGGAGTCTCTAGAGGCACATATGAACAGTCTAGAGGGCAAGAAAGGGGAAGGGTCACCCACAAAAGGATCACCCACCAATAACGTGTCTCCAACCTCCACACCCGCCAAATCAGCCGCTGCCGTCCCTACTTTGGAGCCGCCACGTGCTGAGGCCGCGCCTGCTGCCGCTGAAACTGCCACAGATTCTCTGCTGGATCTGGATCCGTTGTCTTCCTCTGGACCTTCTACAGGAGCATCAGCTGCTCCCACATCTTGGGGAGATCTGCTGGGCTCAGAGATAGGCTCCCTTACTACAGAGACTCTCCTTCCTGACCCAACCCCTGCCGTAGACTCCAACTCCTCAGCCACGCCCACCACCACAGCCGCTGAGGCAGCCGTTTCTTTGGCTCCTCCTTCTTCTGCTGCCGGTGCTTCCTCCGGCTCAGCTGATCTCCTCGGAGATGTGTTTGCGGCACCTGCGGCTGAAACAGCTGCTAGTGCAGAAGGTGGGGCTGCAGCAACCACACCCACCCCTGCTGCCGACGGCACAGCACCAACCGAATCTGCAGGTGCTGGAGAGGCCAAACCAGCTGCCCCAGCTGCAGCGGCTGCTGGAGGAGATCTGATGTCAGCAATGGCTCCACAGGGAGCAGGGGCCACCTCACCGGTCAAACCCATGGGAGGAGATCTGGACTCAGCTATGGCCAACATGGCCAGCAATTTGGCAGTGGGGAACCAGAAACCgGGTGAAGCAGCTGGAGGGGCGAACTGGCAAGCGCAGGTACCCACCCCTAGCTGGGGCGTTGCCATGCCCGGAGCAGGAGCCATGCCTGGCTCTCCAATGATGGCTGCGCAGCAACCGATGATGAGGCCACAGTTTCCCGCAGCAGGAGCCCCTGGACAACCGATGTCTCCAGGAATGGCCCAGAGTCCCAGGAAGCCTCCTCCTCCTAAAGACCCTCTTGCTGACCTCAATATCAAAGACTTCATGTAGATGAGCAGCTGGTTTGTCACACTTATTGTGCAGCCCTGATGAATCAGACGTGTGTATTCTCTCTTCCGTTCATCACATTCAGGGACTCCAGTccctccttttctctctttcccttcccttcccttcccttccctgtCTGTTGTTGTAGCACAAACCGTGAACGTGATTAAGTACatgtgtgtacgtgtgtttgtatttcaaTGTTCTCAGTTacttcagatatatatataaaaaaaagtactatgAAAAATGAGGAGAATGGCAGATGCATTCTTTAATGTGCATCTGCAGGTCTCTTAATGATAGATGTGCATTCATTTTTCCTGGCTCGCTTACCGTgggaaatcaaatcaaaagtgTGACGTTTTCTGTGGAAAATGGTTTTTTGCTGTGGTGAATATCACTGGGCCGGTCTGTGTCATCATCAGTCGAGTATTAGTCATCTTTTGACCACAGAATAACTTCTGTGGGAACAATATCAATGTATTACGAGTTAAGATAGTGTCTCACgcactgtttgtttttatcgaTGCCctgattttattctttttcgtATCTATCGATTGTGAGTTACATGCAACATGTGACtatttgatgaaaatacatatgcattttaaaatattttaaaagacagATTGTTTTGAATATCCTTAGTCtttattttgagataaaaagtttgaatatattttagttatgtCAGAAGTTTACTTTGCATACTACATGGCTAGTTAGTAATCCCATTTGTACAAATGTCTGTGTACATCACAAGGCACTGAGCCGATCGAGTCCTGCTAGTATGTACAATATAATATCGCAGCATGTAATTCCTCTGTTGTGCAAAGGGGACGCCAGTGAGCCAGATCAGATTCTATCAGCAGCAAGTTCACCTACATCCCAATCAACATGTCacgaatagttcaaccaaaagtTACAATTTGCTTAAAACGTACTCACCCTCAGACCACTTAAAATGTGGGTGAGTTTGTTTcctcatcagaacagatttggaataatttatcattgcatcacttgttcaccagtggatcctctgcagtgaatgggtgccatcggaaTGAGCTGATAAAGACATCACAAGAATCCACAAGTTatccacaccgctccagtccatcagttaaagTAAAGCAAAAACCTGTGTTTGTAAGGACCATCAACACAGCTTTAACTtcaaaatgttgctttggcaaAAATATTAGGTTTTCACCCATAAAAtggctttctccagtgaaagtCTGTATCAGGAGGGAAATATGCATGAATGAAACAACAggtctaaacaaatatgttggtgtATTTTAATGTGAGATGAAAAGGACCTTGTGGAGCACTGGTGGAAGCCCTTTTTTGGCTTTAAGCAATggttaaaatgctttaatcatggattttctttcttaaaaaaaatgcagcttttcatttcacaagaaaaaacacatgtactggtgtggattacttgtggattattgtgatgtttttattagctgtttgaactctcattctggcggcacccattcactacagagtaataataatgtaatcgAGTAATCATTATAGAGTAATCCAAgaatgagcaagtgatgtaatgccacatttcttcttctgttctgatgaagaactCATCTCCATCTTGGATGGCCTCAGGGTGAGCAAATTctcatttttcaaacaaactatttctttaaaataggACTGAATATACCTGGCTGCCTAGTGTTTTGTTGTATTGCAAGTGAGTGTGTTACCAATTCTATTTGCTACAAGTATCAAGGATATCAAAGGGACGACCGGCAGTTTCATGGGAcagtattgcattttattgatggctgtttttttatttcaactgaacattttgttgataaattttatttttggatggaATAACACCCTCTGCCCCTCCCACCTTTGTGCATGTTAGTCCTGTTGAAATGCAATAAACAGTGATCTGGAGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37142 lncRNA upstream 77402 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 303337 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 348107 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 386011 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 507800 1112895 ~ 1127380 (+) True LOC122342413
XR_006250791.1 lncRNA downstream 16858 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 35219 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 130478 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 134872 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 176919 1830678 ~ 1830968 (+) True G25086
XM_043236307.1 mRNA upstream 573 1629593 ~ 1634607 (+) True si:ch211-214j24.15
XM_043236316.1 mRNA upstream 10289 1622079 ~ 1624891 (+) True LOC122342485
XM_043236885.1 mRNA upstream 26038 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043237841.1 mRNA downstream 4595 1658354 ~ 1661399 (+) True atp6v1e1b
XM_043237840.1 mRNA downstream 7791 1661550 ~ 1666145 (+) True ada2b
XM_043237839.1 mRNA downstream 7791 1661550 ~ 1666145 (+) False ada2b
XM_043237827.1 mRNA downstream 63762 1717521 ~ 1726321 (+) True ccnd2b
XM_043237825.1 mRNA downstream 73024 1726783 ~ 1731685 (+) True tmem209
TU37077 other upstream 343956 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 969650 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1261098 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1261356 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1340111 293235 ~ 295069 (+) True G24609
TU37269 other downstream 16753 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 130533 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1461749 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1465770 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1785372 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile