RNA id: XM_043236314.1


Basic Information

Item Value
RNA id XM_043236314.1
length 1768
RNA type mRNA
GC content 0.44
exon number 6
gene id apex1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1618977 ~ 1621881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCACATTGCAGAAAGCTTCGGCTTCCCGTCCTTGCAGAGCAGTTTATAGTTCTGCGCAGATTGAGGTTTTATTATAAAGTCAACTAACGATTAAAGTGTTAGCATACTGCAGGCACATGCATTTTGGTTTATGCAGTTCGCGTATTTTATGTGTCCGTGTGTGGGCTGTCAGTTTCTTACGTGTTTGTGGTCTTAAAACAACTGTAAGCATGCCTAAAAGAGCCAAGAAGAATGAGGAAGCTGTCGATGGGGAGACTGGCAATGGAGCTGAACctgcaaagaaagagaaaaagggaaAGGAGCCAGAGGCCCCAATTCTGTATGAAGATCCTCCAGATAAGATGACCAGTAAGGATGGCCGTGCATCCAACATGAAGATCACGTCCTGGAATGTGGACGGTCTGCGCGCGTGGGTCAAAAAGAACGGACTTGATTGGGTGCGTAAGGAGGATCCAGATGTGCTGTGTCTGCAGGAGACTAAGTGCGCTGAGAAAGCCCTGCCGTCTCAGATCACTGAAATGCCTGAGTATCCACACAAGTACTGGGCTGGATCAGAGGATAAGGAGGGTTACAGCGGAGTCGCCATGCTCTGCAAGACTGAACCACTCAGTGTCACCTATGGTATTGGTAAAGAAGAGCATGATAAAGAAGGTCGGGTGATCACTGCTGAGTTTCCGTCTTTCTTCCTGGTCACGGCGTATGTGCCTAATGCAAGTCGCGGTTTGGTGCGCCTCGACTACCGTAAGACCTGGGATGTGGATTTCCGGGCCTACCTGAGTGGCTTGGATCAGCGAAAGCCCCTGGTGCTGTGTGGAGATCTGAATGTGGCCCACCAAGAGATTGATCTAAAAAACCCCAAGGGTAACCGCAAGAACGCAGGCTTCACCCCCGAGGAACGTGAGGGCTTCACCAAACTTCTGGAGGCCGGTTTTACCGACAGTTTTCGGGAGCTATATCCGGATCAAGCCTATGCCTACACCTTCTGGACCTACATGATGAATGCCCGAGGCAAAAACGTCGGCTGGCGTTTGGACTACTTTGTGCTCTCGTCTGCCTTGCTCCCAGGTCTGTGTGACAGCAAGATCCGAAACACAGCCATGGGAAGTGACCACTGTCCTATTACCTTGTATTTGGCAGTGTAGAGCAGGCTTCTCAGGGCCCTACGTTTTTCAGTTCCGTATGCATCTGCATAGACATAAGAATCTAGTCCTGTTAGTTCTAGAATAGTATTTCAGTTCTAAAAACCAAATACAAACCCACATATAGGAATATGTGTCATGCAGACACGCATTGAAAAGAGTCTTGGATAAAGTGTTTTGCTGTTTTGGATAATTCTACTGTTAATGGTCATCTGAAAGTAGATTTTGACACtaaaatctcacaaaaaaaacaactttatatttgcaatgtttaaaaaaaaaaaacctcagacTGTTATCTAAATGATAAACCCTGCCAGACTACTGTAATAATTGTTTCAGTGTTGATTAtagcaaaacattttgaagcTTGTAAAATACATTGACCTGCAAAGATATATGATGTGTCTGATTAGTATGAAGTTCTTTGGATTTTGTCTTTGGTGCTATTTTAACCTTTGGATTCTTCTTTACTCTCGACTTAGTGAAGTTAGTGGTGGTTAAATGTTACATGTGCCACTTTCAAAAGACCAGTGTTTTTccttatgtacttttttttcccatagtGTGTCTGTATAGCCATTTTTCAGGTTTTCAAATAAagtagtttataaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0080111 DNA demethylation biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0006281 DNA repair biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01142 E3.1.11.2, xthA; exodeoxyribonuclease III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37323 lncRNA downstream 23689 1594720 ~ 1595288 (-) False selenoo2
TU37317 lncRNA downstream 36363 1580480 ~ 1582614 (-) False LOC122342802
TU37318 lncRNA downstream 41252 1577201 ~ 1577725 (-) True G25098
TU37229 lncRNA downstream 42261 1576061 ~ 1576716 (-) True G25028
TU37228 lncRNA downstream 43558 1570293 ~ 1575419 (-) True G25027
TU37348 lncRNA upstream 38746 1660605 ~ 1661388 (-) True G25124
TU37349 lncRNA upstream 40486 1662345 ~ 1662607 (-) True G25125
TU37350 lncRNA upstream 41214 1663073 ~ 1663900 (-) True G25126
TU37351 lncRNA upstream 43979 1665838 ~ 1666137 (-) True G25127
TU37364 lncRNA upstream 66499 1688358 ~ 1688894 (-) True G25133
XM_043236884.1 mRNA downstream 681 1609360 ~ 1618296 (-) False zgc:113263
XM_043236883.1 mRNA downstream 681 1609360 ~ 1618296 (-) False zgc:113263
XM_043236881.1 mRNA downstream 682 1609360 ~ 1618295 (-) True zgc:113263
XM_043236882.1 mRNA downstream 683 1609360 ~ 1618294 (-) False zgc:113263
XM_043236890.1 mRNA downstream 14287 1594284 ~ 1604690 (-) True selenoo2
XM_043236317.1 mRNA upstream 3436 1625295 ~ 1628655 (-) True si:ch211-214j24.10
XM_043236318.1 mRNA upstream 31739 1653598 ~ 1654826 (-) True ccdc167
XM_043236298.1 mRNA upstream 33177 1655036 ~ 1658265 (-) True si:ch211-214j24.14
XM_043236299.1 mRNA upstream 33177 1655036 ~ 1657597 (-) False si:ch211-214j24.14
XM_043237973.1 mRNA upstream 44786 1666645 ~ 1670146 (-) True LOC122343486
XR_006250650.1 other downstream 679 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 679 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 548881 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 685869 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1427735 186460 ~ 191242 (-) True G24708
TU37319 other upstream 31732 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 279984 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 421094 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 680468 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 682487 2304346 ~ 2375716 (-) False dock4b

Expression Profile