RNA id: XM_043236317.1


Basic Information

Item Value
RNA id XM_043236317.1
length 1663
RNA type mRNA
GC content 0.47
exon number 4
gene id si:ch211-214j24.10
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1625295 ~ 1628655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATCGCCCCATTTCTCCCTGGTGACTGTCACTTCCGTATGATAGCATTAAGCAACACGCCGCTGCGCGACACACTCACGTAGACACACAAAAGTCCAAACCGCGTTTAAAAACCGGATTTATCATATCGAAATGCATATCAAAACAGGTACCTGGGAGTCAAGCAATGCAGTGTGTGAGTCTGACCCCTTGTGTGATCCAGCCGTCCTAGTGTCACCCCCTAAACCTGAACCACAGATCCGAAACCGTCGCCTTTCCCCCGGCTCTGGCAGCTGCGGTGGGGGAGGAGGGGGCTGTTCCTCTGGGATGGATAAACGTCAAGCCTCACCGAGTAGCCTGGAAGGTTCTCTGAATGGGGTGGGTCACACCCAGACCTTCACATCTAGAGAGCGTCGTGTCCCGAATAAATCAAGAAGCTTTCGGCGTGACGGCCCGAGACCAGGGCCACGTTCGGATGAGAGACACTATCGAACCGGTCAGAAAGAACGATGGGTAGACAACAGCCTGTCTTTACTTAAACCTCCACCTGCTTTCCCAGTGAAGGACAGTCCCGCCAAACTGCAGCCGGCTGTCAGCTATGCCTCCAAGGTGAAGGCAGGGGGAGGATCTGTCGGGGCAGCCGAAGAGCCCCCTGGTATCGGGGTTTTGCTGCAGAACCAGTGGGGACTCAGCTTCATCAGTGACGGCCCGGAAGCAGATGATCCCCAGGAGAAAACCCCGGATCTCCACCCAGTTGCTGGAGAGGTTACTGTAAAGCTGGAGTCTCTGCCTGGTCAGATCACAAGAGGCTCAGAGAGTTCAGAGGAGCTGCTGCTTAGCTGTCGCCACCTGGAGGAAGCGTTGGAGTATCACACACAAGAAtggaaagcaatattatggagaCAAAAACAAGacCCTGCAAAGATTGTTTGGTACAAGAATGCCCTGGAGTCGCCTGCCTAGCACACACTAAcatgtctacacacacacacacacacactcgaaaCAAACACACCCCGCACTCAGGTTCTCATCCCCTCAAAGTTTCCACCGAGACACTTTAGGACTTGTTCCCCTATGAAGATAGATGTCTTGGACTTCTCGGTTGCCTTACAACAGAGTCTGCCTCAGGCGCAGAGTCCCTCTGCTTACCTCTGTCATTTTAATGGTGGAGAATTGtctcttttaagaaaaaaagctgcaattttatttcagtgaactgcagttttacagttaaaaatccCTTTTATTCCTCCCTTGTTCCTACTGTGTGCAAGTGGTTAAATCAAGCACTTTCTGACCTGTAGTTGAACATGTCATCCCTTTCTATAAAGACTGAGCCCGTTTTTAGAACCAAATCCAGAATGTCTTCATCAGTCTTCCCTCTGGTGATAATCCCTTTCTTTCCACACAAATTGTTCTCATGAAGTTTACAGAGGTGCCATTGGCACGTTACGGCAGCACCTTCAAATGTCTATTGGtcttaatgctgttttttaatatatttcaccCAGATTGAATGTCGGTCATAAATCCTAATAGGAATCCGTTGCTGTGTatgacctattttttttttgtttgtttttttttttttttagaaacatacaaataatttaCACTGGAAGATGTTCAGAGATTTAATCGAACAgtgttgaataaaaatgaataaacttgttaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37323 lncRNA downstream 30007 1594720 ~ 1595288 (-) False selenoo2
TU37317 lncRNA downstream 42681 1580480 ~ 1582614 (-) False LOC122342802
TU37318 lncRNA downstream 47570 1577201 ~ 1577725 (-) True G25098
TU37229 lncRNA downstream 48579 1576061 ~ 1576716 (-) True G25028
TU37228 lncRNA downstream 49876 1570293 ~ 1575419 (-) True G25027
TU37348 lncRNA upstream 31950 1660605 ~ 1661388 (-) True G25124
TU37349 lncRNA upstream 33690 1662345 ~ 1662607 (-) True G25125
TU37350 lncRNA upstream 34418 1663073 ~ 1663900 (-) True G25126
TU37351 lncRNA upstream 37183 1665838 ~ 1666137 (-) True G25127
TU37364 lncRNA upstream 59703 1688358 ~ 1688894 (-) True G25133
XM_043236315.1 mRNA downstream 3414 1618977 ~ 1621881 (-) False apex1
XM_043236314.1 mRNA downstream 3436 1618977 ~ 1621859 (-) True apex1
XM_043236884.1 mRNA downstream 6999 1609360 ~ 1618296 (-) False zgc:113263
XM_043236883.1 mRNA downstream 6999 1609360 ~ 1618296 (-) False zgc:113263
XM_043236881.1 mRNA downstream 7000 1609360 ~ 1618295 (-) True zgc:113263
XM_043236318.1 mRNA upstream 24943 1653598 ~ 1654826 (-) True ccdc167
XM_043236298.1 mRNA upstream 26381 1655036 ~ 1658265 (-) True si:ch211-214j24.14
XM_043236299.1 mRNA upstream 26381 1655036 ~ 1657597 (-) False si:ch211-214j24.14
XM_043237973.1 mRNA upstream 37990 1666645 ~ 1670146 (-) True LOC122343486
XM_043237974.1 mRNA upstream 46547 1675202 ~ 1678612 (-) True LOC122343487
XR_006250650.1 other downstream 6997 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 6997 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 555199 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 692187 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1434053 186460 ~ 191242 (-) True G24708
TU37319 other upstream 24936 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 273188 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 414298 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 673672 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 675691 2304346 ~ 2375716 (-) False dock4b

Expression Profile