RNA id: XM_043236319.1


Basic Information

Item Value
RNA id XM_043236319.1
length 2203
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC122342488
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15555251 ~ 15588908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAGCGCAACTTTTTCCTCAGGCAAAGTGAAATCAAGCCGCGCGCTCGGACAAAATATAGTTCCACGTTTTCAACTCaaagtcttaaaaataaagccgTGCGTGTCGAATAGGTCGGATAGGCTCTCGCCGTGTGGATATCGGAGTGGATATATGCGACCGCTGAAATCTTTAGCTCGCCTTTTGAGCACTTTTGTTTATACTGGCGTAAAGTGGGTGATGAGTCTTACGGCCAGTAAAGAAGCGAGAACTTGCTGTGCAGCCCGAGTAGTTCTTGCGATTGTTattgttgctttaaaaaatatttgtattacgCCACAAATAACGCGGATCGCGTCGAAAGTGGGGGAAAAGTGCTTCTGAAGTCGGAATATGGAGCTACAAGGCCTTCAAGAAGCATTGAAAGTAGAAGTCCAATGTCATCagAAGCTCGCTGTCAGAAGTTGTCCTGTGGGGACAGCCGCCAAACCCCTCGCCCTCATCAAGCCGCCCAGTCAGAGCATCGCCATCTCTGTGGTGCCAGCAAAGACTCCCGTTTCCATGGTGACGGCACACATTAATGGACAAAAGGCGTTGAGTTCTGAGACGCTCCAGACGTCCCCCATCAACCTCCAAACACCCGCCGGACAGCACATCAGCCGCTCACAGATGTTGGGAGCCCTCTCCGCGATCCCGATAAAGGTGCCTCACATCAGCTCTCTGCAGCGGCTGGCAGGACACTCACCCAGTGTGCTACCTCAGGTCAGGCCAAAGACTCTCATTCCAGACAGCCTTCCCCACAGCCCATGCCGAGAGCAGCAGTCCGGTCAAACGCTGGCTGTGCCGCAGAGCATGGCTGTGGTCAGCCCAAAGAACCAAGGCGCATCTTTGCCAACTGCCAACAGCACCTTCAGTCATGAGAGACTGTCAAATGGGCAGGAAGAGAGTTCCTCTTTGCCCTCGTCTGCGCCGAGCACGTCCACGGCCTCCACGAGTCCAGGGGTGGCTTACGCCATCATCTCAGCAGCCTCGCCAGCAGCTCATGGGGTGTCAGGAGGAGTAACCGAGGCCATTAAGGTGCAACCGCTGATTTTCAGCCCTGACAGCAAGGTTATAATCATTCAGCCCCAGATTCCTAGTAACTCCACGAGTTCTACAGCCTCACAAACTAGCAGTCCTGTGAAGGAGCCAAGTCCCGACCCCTCAACCCCAGACAAAAAGGAGGAGGATCCAGAGaaagttGCCTTCATGGTCGCACTAGGCCTAGTCACTACAGAACACTTGGAAGAGATCCAGAGTAAACGGCAGGAGAGAAAAAGGCGAAGCACGGCTAACCCTGCGTACAGCGGGCTGTTTGAACCAGAGCGCAAACGGCTTGCCTCCAATTACCTGAACAGTGCGATGTTTCTGTCGGCGAGAGACTCTGAGGAGCTCTGCTGGAAGgAGGAGATGCAGCATGATGAGCACTGTGCAGTGTGTAAACAGGAAGGAGATCTTCAGCCGTGCCACACTTGCACCCGCTCCTACCACCCTGACTGTCTGCATCCACCTCTCAAAACTGCCACCAGGGGCATATGGATGTGCCCCAAGTGCCAGAAGAAAGTTTTGAACAAAGAGAACTTGTCTTGGCCACAGAACTTCATCCAGTCGTATGTTACACATAAAACAGTGAGAGAGGAGGAGCGCGGGAAGCTAATGAGAAGAAACACCGAGCTGAAACTTGAGTGTGAACATCTGAGTGATGAGGACAAGAGACTCTGCGATTCTCTTTCGAAATGCATTGAGCTGAAGGAGCGTCTTTTAGGTCAGCAGCGGGAGACTCAGACGTCCCTTGAGCGTCTCAAGACTCTGATCCGGCTCATCCAGCGTGACCAGATGATCCAAGTGACTATGACCGCCACCACCACCACCGGAGCATCGCTGCTCTCGCTGCCGTGGATCAAAGCCGCGGGCAGCAGCACCAGCGCCACAGCGCCCACAGCTGGCTCCTCCGCAGTACTGCACAAAACCACGCTCCAGCCGCAAGGCAACAACTGACCCCGAACCCACACAGAGACGCGCAGAACAGCTCTCTTCGTGAAGACACACGGACGGTAACATCCAACCAACGTGCATTTTCTTCTGGTAACGTCTTAccataaaatattgaaaagttCGAACGAAATTACGAGCGTCACTCAATtcataagtattttttaaagccAACACACAGTgctcacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250641.1 lncRNA downstream 110022 15443764 ~ 15445229 (-) True LOC122342747
TU42788 lncRNA downstream 137013 15416856 ~ 15418238 (-) True G28850
TU42674 lncRNA downstream 341800 15209684 ~ 15213451 (-) True G28789
XR_006250554.1 lncRNA downstream 531388 15017785 ~ 15023863 (-) True LOC122342397
TU42586 lncRNA downstream 551822 15003149 ~ 15003429 (-) True G28738
TU42849 lncRNA upstream 144455 15733363 ~ 15733883 (-) True G28887
TU42857 lncRNA upstream 254497 15843405 ~ 15843739 (-) True G28895
TU42859 lncRNA upstream 339235 15928143 ~ 15928900 (-) True G28897
TU42891 lncRNA upstream 789792 16378700 ~ 16383670 (-) True G28916
TU42910 lncRNA upstream 822952 16411860 ~ 16419956 (-) True G28933
XM_043236578.1 mRNA downstream 407041 15143788 ~ 15148210 (-) True alg12
XM_043237810.1 mRNA downstream 418712 15124045 ~ 15136539 (-) False brd1a
XM_043237809.1 mRNA downstream 418712 15124045 ~ 15136539 (-) False brd1a
XM_043237808.1 mRNA downstream 418714 15124045 ~ 15136537 (-) False brd1a
XM_043237807.1 mRNA downstream 418715 15124045 ~ 15136536 (-) True brd1a
XM_043236562.1 mRNA upstream 12532 15601440 ~ 15611575 (-) True kiaa0930
XM_043237519.1 mRNA upstream 24210 15613118 ~ 15632452 (-) True large1
XM_043236027.1 mRNA upstream 55281 15644189 ~ 15647843 (-) True sapcd1
XM_043236026.1 mRNA upstream 55281 15644189 ~ 15647729 (-) False sapcd1
XM_043236426.1 mRNA upstream 67167 15656075 ~ 15664306 (-) False slc37a3
TU42583 other downstream 527633 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 527633 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 745114 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 858065 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 1378526 14169422 ~ 14176725 (-) False cerk
XR_006250613.1 other upstream 12532 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 258061 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 268476 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 291213 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 291612 15880520 ~ 15880638 (-) True LOC122343711

Expression Profile