Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043236321.1 |
| length | 1402 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 2 |
| gene id | six1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056702.1 |
| NCBI id | CM032071.1 |
| chromosome length | 29200999 |
| location | 16937799 ~ 16939687 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0043282 | pharyngeal muscle development | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002074 | extraocular skeletal muscle development | biological_process |
| GO:0048839 | inner ear development | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0048935 | peripheral nervous system neuron development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K15614 | SIX1; homeobox protein SIX1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006250658.1 | lncRNA | upstream | 26457 | 16897515 ~ 16911342 (+) | True | LOC122342883 |
| XR_006250659.1 | lncRNA | upstream | 26457 | 16897515 ~ 16911342 (+) | False | LOC122342883 |
| TU43024 | lncRNA | upstream | 185210 | 16748718 ~ 16752589 (+) | True | G29026 |
| XR_006250728.1 | lncRNA | upstream | 237581 | 16698521 ~ 16700218 (+) | True | LOC122343214 |
| TU43008 | lncRNA | upstream | 327795 | 16609724 ~ 16610004 (+) | True | G29011 |
| TU43090 | lncRNA | downstream | 1329 | 16941016 ~ 16941310 (+) | True | G29078 |
| TU43099 | lncRNA | downstream | 97586 | 17037273 ~ 17038220 (+) | True | G29086 |
| TU43100 | lncRNA | downstream | 98767 | 17038454 ~ 17040830 (+) | True | atp5mj |
| TU43101 | lncRNA | downstream | 98767 | 17038454 ~ 17040772 (+) | False | atp5mj |
| TU43107 | lncRNA | downstream | 107184 | 17046871 ~ 17085857 (+) | False | G29089 |
| XM_043237031.1 | mRNA | upstream | 5593 | 16925017 ~ 16932206 (+) | True | six4b |
| XM_043237784.1 | mRNA | upstream | 99375 | 16822113 ~ 16838424 (+) | True | rhoj |
| XM_043237522.1 | mRNA | upstream | 227643 | 16701043 ~ 16710156 (+) | True | chrna2b |
| XM_043237523.1 | mRNA | upstream | 227643 | 16701043 ~ 16710156 (+) | False | chrna2b |
| XM_043236038.1 | mRNA | upstream | 320581 | 16615345 ~ 16617218 (+) | True | LOC122342226 |
| XM_043237785.1 | mRNA | downstream | 60218 | 16999905 ~ 17026338 (+) | True | rtn1b |
| XM_043237786.1 | mRNA | downstream | 76922 | 17016609 ~ 17026338 (+) | False | rtn1b |
| XM_043237706.1 | mRNA | downstream | 94234 | 17033921 ~ 17037157 (+) | True | rd3l |
| XM_043236560.1 | mRNA | downstream | 98732 | 17038419 ~ 17040714 (+) | False | atp5mj |
| XM_043236555.1 | mRNA | downstream | 101170 | 17040857 ~ 17083120 (+) | False | ppp1r13bb |
| TU42966 | other | upstream | 463418 | 16473898 ~ 16474381 (+) | True | G28982 |
| TU42861 | other | upstream | 952073 | 15985219 ~ 15985726 (+) | True | G28899 |
| TU42853 | other | upstream | 1095944 | 15841372 ~ 15841855 (+) | True | G28891 |
| TU42722 | other | upstream | 1282618 | 15650295 ~ 15655181 (+) | True | cdkn1d |
| TU42701 | other | upstream | 1382117 | 15439334 ~ 15555682 (+) | True | G28806 |
| TU43729 | other | downstream | 1360728 | 18300415 ~ 18301189 (+) | True | G29526 |
| TU43756 | other | downstream | 1496773 | 18436460 ~ 18461317 (+) | True | G29545 |
| TU43926 | other | downstream | 1943492 | 18883179 ~ 18886402 (+) | True | G29642 |
| TU44195 | other | downstream | 2350533 | 19290220 ~ 19342911 (+) | True | G29814 |
| TU44225 | other | downstream | 2791575 | 19731262 ~ 19786128 (+) | False | G29835 |
