RNA id: XM_043236326.1


Basic Information

Item Value
RNA id XM_043236326.1
length 988
RNA type mRNA
GC content 0.42
exon number 7
gene id ssbp1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1366719 ~ 1368745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttaaataaGCCGCGAAGTATTGTTTGTAGATTATAAATCGTCGATGTAAAGCGCACAAACAGTGTTGCATGCGTCTTCTAGTTGATGTAAGTGATTGGCGGGAGATTAACATGTGTTTCATCATTGAGTTTGGTTTAATGACCTGTCATCACACGTCTTAGCATCACCCAGAGTGAAGAAGATGTTGAGAAATGCCTCTGCACAGATACTTAAACAGTTGGTCCGGCACAGGACTACAGATGCTAATTTGATCTTGGAGAGATCCATTAACCGGGTGCAGCTGCTTGGGCGAGTGGGACAGGATCCCGTCATGAGACAGGTGGAGGGCAGAAACCCCGTCACCATCTTCTCCATGGCAACAAATGAGATGTGGCGGTCTGGGGAGGGAGAACCAACAGGTACAGgagaTGTTAGCCAGAAAACGACATGGCACAGAATCTCAGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTACGTAAAGAAAGGGTCTCGGATTCTTGTTGAAGGAAAGCTCGACTATGGAGAGTACACGGATAAAAACAATGTCAGGCGACAGGCAACAACTATTGTTGCAGataatattgtgtttttaagtgaAAACCTGCGAGACGAGTAGTGAGGACTCCTTCCTGGACTGTAGGAaccaaaagaagatattttatatagtgtTACTCTGCTCACTGACATTAAACTCTTGAGTATCTTTCTGTCCGGCCTCATCAGTCATACATAGACTTAAGAAGTCTTGTCGTTTTTTTGATTGTCATGCATCGTGTCTTATTTCCGACAGAGGGCGCTGACAGATGCACTTTGACATGTATCTACTTTCCAGAACCAAGCACTGGATTAGACTCTTTGTATAAGAAATGCTACATTTCCCTTTTCTGGACTTTCGAAACATAAAAGCATCATATTTGACGTTATATCTAATCAAGTCACTTGTAATGTtatgttcataaataaatgtaagttgTTCAGTA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005739 mitochondrion cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 35010 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 79780 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 117684 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 239473 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 433742 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 187647 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 301872 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 320233 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 415492 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 419886 1788631 ~ 1789276 (+) True G25030
XM_043236330.1 mRNA upstream 783 1352403 ~ 1366070 (+) True c4h12orf56
XM_043236338.1 mRNA upstream 15180 1346185 ~ 1351673 (+) True zgc:162331
XM_043236190.1 mRNA upstream 35821 1329452 ~ 1331032 (+) False LOC122342419
XM_043236823.1 mRNA upstream 77372 1288297 ~ 1289481 (+) False ndufa5
XM_043237711.1 mRNA upstream 94765 1260397 ~ 1272088 (+) False waslb
XM_043237823.1 mRNA downstream 647 1369392 ~ 1385823 (+) True creb3l2
XM_043236268.1 mRNA downstream 17768 1386513 ~ 1425816 (+) True dgki
XM_043236269.1 mRNA downstream 17768 1386513 ~ 1425816 (+) False dgki
XM_043236274.1 mRNA downstream 17768 1386513 ~ 1425816 (+) False dgki
XM_043236277.1 mRNA downstream 17768 1386513 ~ 1425816 (+) False dgki
TU37077 other upstream 75629 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 701323 654092 ~ 665530 (+) True G24771
TU36683 other upstream 992771 373527 ~ 374082 (+) True G24632
TU36680 other upstream 993029 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1071784 293235 ~ 295069 (+) True G24609
TU37269 other downstream 301767 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 415547 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1746763 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1750784 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2070386 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile