RNA id: XM_043236330.1


Basic Information

Item Value
RNA id XM_043236330.1
length 2350
RNA type mRNA
GC content 0.51
exon number 13
gene id c4h12orf56
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1352403 ~ 1366070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcacagagagagagagtgcaccTTACAGCCGACACAGCGGGGCTTCAGTGAATGCAGAAATGGCTTCTGCATGCTGCTGAATATGACAGCGCGCGCGGGGTATGGGCCGTAGGGCGTGTGCGGTGATAAAGGTGACATTCCCATGGCCAGAACCGGCGCGCGCGGGCTGCTCCGTCACAGCAACAGCAAGCTGGACTCTTTCCTCAAGAGGAACACCAGTCGGGATGTGTACGAGCGGATCCGGGTCTACGAGCCGTGCGTGGTGGTCTCGGGCTCGGTCAAGAAGGTGTTCATGCACGTGATCCTGAGCGACGAGCGCGTGTATCTGAGCGAGTATCAGCCGCGCGCGCTGCGAGAGGCGCTCAGCTTCAGACACGTCAAGAGCATCGAGCTGATCAACGATTTGCCAGATTTCCTCAGCGGACAGGATCGGGAGCGCTCCATGCATATCCGTGTTGTTCATACCACAAAGGATCCTGGGAAAAAGAGCTCCAGACCCAAAGGATCCCTTCAGAATGAGCCATCATTTCCATTGCGAGGACGCAACTCGAGTGCCCGTCATTCTCTGGAGGGCGTGAGTCCTCGTGAGTCCTCCAGCTGGAGAAGCTCTCCCACATCAATGAGCGATGGTGGCCCGGAGGAAGAAGGCGGCAGCGTCGTTCCGAAGAGACGTTCAGCTTCCTGTCCGAACCCGGACGTGTTGGCTCTGTCTGTGTTTGACACGTCTCCCGCTCACTCGTCCAGCTCCAGTCCCAGCGCTTCAGTCTCCACAGCTCTGACGAGGAGAACGACAGCtgaggagaaagaggaagagttACACCTTTACTCCGTCTCTCCAATGTCACGAATATACCTTCACCTGCAGAGCTCCTGGAGCAGCTACATCATACGCTCAACATTGCTGCTGGACCCAGCATACAGGAAGAGATGCGgcatctcctcctcctctcctcagAAACAGCAATATCAGAAAACCAGCTGGGAAAGAACGTGCGAGCTGTTCAGTCAGTTAAGCGGAGAGCTGCTGCAGGACAACATCAGCCTAGAGAGTCTGTATTTACTCCTTCAGGAGCTGCACACAGCCACGAACCGAAACCCCGCCATCAAAAAACTCTTCTGGAGGTCACCGGACCTTTATCCTTTCCTGGTGAAAACGCTGTCTGAAAGCTCTCAGGACGGCCAGGAGGGAGTTCACACAGCCGACAGACTACTGCTGAGCACTCTGGTGGTCCAGATATTAAGCCTGATGTTCAGGGAAACCGAGGTGGAAGTGGCGAGGCTCAGCATGCTGACGGCCAAACAGGGAGCTCTTACAGAAAACATGCTGCTGGCTTTAGTGTGCGATCCGGACCTCCACCACTCTAACGGCTCCAAATCTTCACTTAATAAGCTGCAGCGTCTGAAAGCAGATTATCTGGATGCGGCGTCTGTGCTGCTGTTTGAGGTGGTTGTGTTCTGTCAGGAGGCTAGTAGCACACCTGCTCTGGGACGTTTCCTCACCATAGGCTGGGTGTTTCGCTTGCTGAAACCGCATCCATTCTTATTCCCGTTCGTGGGCTATCAGGCTCAGCAGCTGGTTCTGGTTCTGTCGGGCCCTCGGGATCGTCTCGGCCCATCTCAGGCGGTTCTCCTGTTCCAGCGCTGCCGGGTTCTGTTAGCCTGTCTGCAGCACAGCACCTGTCTCAGCAAGTACATCAGGACGGCTTTCAAAGAGGAGTTCAGGTACTACGTGAAGACGTCCGGGCTGGAGGACAAACTGCCCCATCACTACCCCATCAGTCAGCCTGCCCAGCACCTTCTTTCCCAGCTCCTCAGTCTCGTTCTCCAGAAACCCTGAGCTCTTTCTGTTCCTCTGcggttcatttatttttttatttctctagaTAGACGTGGGAATATGCCTTTGAGTGAACATACTGCACTTTAAGATCGAGGTCAAGTCTTATATTGTGTCTTACTGTGTGTTTTGAATAGAGACTGTGGGATTTTACTCTGCCTTTGTATACACTCAGGATTATTATCgctaataaaaattttatggAAAGTCAATGCAGAGAACATGAACATCACAGGACATTTAATATATTCGAATAAAGAacataatatgcattttcaatGAACACATTCAAGTTTGGCAAGGCGCTCTAATATATCACAGTATTATAACATGAGTgtgaatatttttcatatttattatgctgTACTGTATCTAAAGCCACTGGTGCTGATGCACTTGTTTATTTTGGTTGGTTTTTGTTTGAATGCACTTTTTCTCTGTAACACTGTAGTGATTTTCAGGAACTCTGTACCTCAAAGCCTCAAATTAAAAGTATCGATATTTTAGATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 20560 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 65330 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 103234 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 225023 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 419292 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 190322 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 304547 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 322908 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 418167 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 422561 1788631 ~ 1789276 (+) True G25030
XM_043236338.1 mRNA upstream 730 1346185 ~ 1351673 (+) True zgc:162331
XM_043236190.1 mRNA upstream 21371 1329452 ~ 1331032 (+) False LOC122342419
XM_043236823.1 mRNA upstream 62922 1288297 ~ 1289481 (+) False ndufa5
XM_043237710.1 mRNA upstream 80315 1257733 ~ 1272088 (+) False waslb
XM_043236325.1 mRNA downstream 649 1366719 ~ 1368745 (+) False ssbp1
XM_043236326.1 mRNA downstream 783 1366853 ~ 1368745 (+) True ssbp1
XM_043237823.1 mRNA downstream 3322 1369392 ~ 1385823 (+) True creb3l2
XM_043236268.1 mRNA downstream 20443 1386513 ~ 1425816 (+) True dgki
XM_043236269.1 mRNA downstream 20443 1386513 ~ 1425816 (+) False dgki
TU37077 other upstream 61179 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 686873 654092 ~ 665530 (+) True G24771
TU36683 other upstream 978321 373527 ~ 374082 (+) True G24632
TU36680 other upstream 978579 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1057334 293235 ~ 295069 (+) True G24609
TU37269 other downstream 304442 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 418222 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1749438 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1753459 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 2073061 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile