RNA id: XM_043236334.1


Basic Information

Item Value
RNA id XM_043236334.1
length 3214
RNA type mRNA
GC content 0.49
exon number 16
gene id cdk17
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2863140 ~ 2904289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGTCGGAAAAAGGCGGTTTGCGttcgcgtgtgtgtgttggcgGAGAGTGGAAAGACGGCATCCGGCCTCCGAGAAGCAGGCGAGGGCAGGGACTCGCGTCCAAACAACGTTCACCGTCTCTGAGCCCATCGTGAGGAATGGCCGGCCGCCCTCTTCCCACAGCATGCACTCGTTTTTGCACCAGTATACGGGCTCCTTTAAGAAGCCTCCCCTGCGCCGACCGCACAGTGTCATCGGGGGCAGTCTGGGGTCCTTCATGGCCATGCCTCGAAACGGCAGCCGTCTCGACATTGTTCATGAGAATTTGAAGATGGGTTCGGATGGAGAGAGCGATCAGGCCTCAGGGACGTCCTCGGACGAAGTGCAATCGCCCACCGGCGTGTGTCTCCGCACCAGAACTCATCGGCGTATATCCATGGAGGACCTGAATAAACGCTTGTCTTTGCCTGCTGATATCCGGATTCCTGACGGTTACCTGGAAAAGCTGCAGCTGAGCAGCCCGCCGTTTGACCAGCCCCTCAGCCGACGGTCACGCAGAGCCTCACTGtcAGAAATCGGCTTTGGGAAACTGGAGACCTACATCAAACTGGACAAGTTGGGAGAGGGGACGTATGCCACCGTTTTCAAGGGACGGAGCAAACTGACGGACAACCTGGTAGCTCTGAAAGAGATCAGGTTGGAGCACGAGGAGGGCGCTCCGTGCACAGCTATTAGAGAAGtgtCATTATTGAAGGATTTAAAGCACGCCAACATCGTCACGCTTCATGATATTGTCCACACAGACAAATCCCTCACTCTGGTCTTTGAGTATCTGGATAAGGATCTGAAGCAGTACATGGACGATTGTGGAAACATCATGAGCATGCACAACGTTAAGATTTTCCTGTTCCAGATCTTGAGAGGACTGGCGTATTGCCACAGACGCAAGGTCCTGCACCGGGACCTCAAACCACAGAACCTGCTCATCAATGAGAGGGGCGAACTTAAACTGGCAGACTTTGgtCTGGCACGAGCCAAGTCGGTTCCCACTAAGACATACTCTAATGAGGTGGTGACCTTATGGTACAGACCTCCTGATGTACTGCTGGGATCCTCAGAGTACTCCACGCAGATCGATATGTGggGTGTTGGATGTATATTTTACGAAATGGCTGCAGGTCGGCCGCTGTTCCCAGGATCCACCGTTGAAGATGAGCTGCATCTAATCTTCAGATTACTGGGAACACCCACAGAGGACAACTGGCCCGGCATCTCATCCATCGAAGAGTTCAAATCTTACAACTTCCCCAAATACAAGCCTCAGCCCTTCATCAATCACGCGCCCAGGTTGGATACCGAAGGAATAGAGCTGTTATTGTCCTTTCTAAGGtaTGAATCCAAGAAGAGGATCTCTGCAGATGAATCAATGAAACACTCCTACTTCAAGAGTCTGGGCATGCGTGTCCACACACTGCCAGAGAACATATCCATATTTACACTGAAGGAAGTGCAGCTTCAGAGGGACCCCGGTTACCGGAACTCCTCGTACCCAgagacagGCAACAGCAAGAACAGACGGCAGAGCATGCTGTTTTAAGCTGCGTTCCCTCACGCTCTTGCCCATcgctctcacactctctctcacacacacacacagacacacacacactcacacacttgaCGGATCAGTTCGACAGCTCTTATTCCGTGACTGTGTTGTATAGACTAACAGACTTAGTCCCCCCTCGCTCACAGAGAGAGGGGTGTTTGTCGCGTGTGCATGCGTGATGAAGGGGATCGGCTGAACCCGCTGTCTCCCCCCCCCTCCAGTGTCCCGTCATCCAGCATGCAGCCTTGAGCCAGAACGCCCAACGGCCCCTCGTCTGGACGCCCCCTTCCCCTTCCCCCGTGTGACGCTTAGGGTGTGTGaacgtgtatatatttattgacgGAGGGGTTGTTTTGCTGCTAATTGACTACTGTCTCTACGTAACTTCCTCACTCTCGGGGCGACCCTTGTGGACACATCAgtcccacttttttttttttttttttaaagaacgaTTATAATTCTGtcgagaagagaaaaaaaaaatgtcgaTATCGCAGCTGTCCGTTTGTCGTCGTGTTGGTTTTACAGAGGTGGAATGCCTATGCGAGTGTTTTGAATTTGCTTTTGGTTTTCTGGCGTGGCGTTTGCGCTTCAGACCGAGCGACGGACTCGGAGCATCCATTCCAGAACCTCACATTTTAACGTATCATTTCAAGGAAATATGGATTTGTTCCTCAAAGGCCACGCGTCACGCGAACCAGGGACCATCTCGGCCGGGTGGACTCGCAGCAAACgagagtgggaaaaaaaaacaaacactggaCCAGCGGGAACTTTGTGACCTCAACGTTTTGAACTGAGAACCGGACCATCTCTCCTTTTGCATTCATTCAGAGTGATCCTATTGGAACTGAAGTGCTTGTATGccagatgtgtttttaattctttctttgACCTTTAGAGCTCCTGATGCATCATCACAACCAGTTTCTTCTATTAATAGAGCTCCTTTGTAGCTTCTGAGTGTATGCGACGCTTTTAAAAGAGCAAGAAAGTGAGGTTGTACGTGTGAAAATGGAGAGCTGTAACTGTACAGAGCCCATTAAAGGCTCCATGCAAGCGATGGCTATGAAGATGAGCTAGTTTCAATAACagtattaagatttttttttttttattgacccTTCTGTGAATAATGGTATCTTAATGTGGCATGTTGGAGTCCGACTGTCCCACATTtgtgcttgattttattcagaagaGAATACGATATTGtgtgtataaaaagaaaaaagtaataacaaaaaaacaaaaaaaaacttttgacagCAGCGTTGGACCAATGTTTCATTTCCCAGCATTTATAAACATGAAGAATGCAGAAATTATCAGATTTTAGatgactgttgttttttttttttttttttaaactgacagatgttaattaatattgtcAAATCGGAGTCGATCGTTTCTGGAGATGCGTGCGTGGATGTGTGCGTGATTGCGTGTGTATACGTGACGCATGCGTGAGTGCGTGGTGTCCTGTAAGCTCCGCCTCCGTGAAACACTGACGCTCTCAGTCCCAGCTGTCGGCTGAATTGACCGTTTAACTCTTTGTACTGCAGatatttatttctcttaatCAGTGAAGTAAACATGGTCTGTTTCATACAGCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250774.1 lncRNA downstream 325134 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 325682 2535072 ~ 2537458 (-) False LOC122343423
TU37702 lncRNA downstream 390106 2472284 ~ 2473034 (-) False LOC122342907
XR_006250773.1 lncRNA downstream 574021 2279226 ~ 2289119 (-) True LOC122343417
TU37692 lncRNA downstream 579362 2283285 ~ 2283778 (-) True G25362
TU38074 lncRNA upstream 76021 2980159 ~ 2996458 (-) True G25625
TU38062 lncRNA upstream 102632 3006770 ~ 3012214 (-) True ccdc3a
XR_006250573.1 lncRNA upstream 212266 3116404 ~ 3117297 (-) True LOC122342459
XR_006250572.1 lncRNA upstream 213341 3117479 ~ 3119550 (-) True LOC122342458
TU38132 lncRNA upstream 476520 3380658 ~ 3676399 (-) True G25673
XM_043237897.1 mRNA downstream 18135 2835848 ~ 2845005 (-) True lta4h
XM_043237853.1 mRNA downstream 39993 2783461 ~ 2823147 (-) True tfec
XM_043237074.1 mRNA upstream 23667 2927805 ~ 2934976 (-) False mcm10
XM_043237073.1 mRNA upstream 23667 2927805 ~ 2934976 (-) True mcm10
XM_043237077.1 mRNA upstream 30969 2935107 ~ 2938017 (-) False nudt5
XM_043237076.1 mRNA upstream 30969 2935107 ~ 2938015 (-) True nudt5
XM_043237124.1 mRNA upstream 95744 2999882 ~ 3006792 (-) False ccdc3a
XR_006250644.1 other downstream 487424 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 487424 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 774561 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 960573 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 1208333 1653591 ~ 1654807 (-) False ccdc167
TU38086 other upstream 116924 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 630699 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 644088 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 696862 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 698220 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile