RNA id: XM_043236341.1


Basic Information

Item Value
RNA id XM_043236341.1
length 3224
RNA type mRNA
GC content 0.51
exon number 20
gene id itih2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13152421 ~ 13164123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCTGAACATTTAGCCTCagttacagtgtgtgtgtgtgtggaccgTGCTGTCCTTTTTGTGCTTTCTTGAgtggatgctttttttttcgGGTTCCATGAAGACTCCGGTTCTCCTGTGCGTCCTGCTCTTTTCTCAGAGCTGGGCTTTCGAGTTCATCGTCGATGGGGAGTGGGAAAGCGAAACATCAGGTCCTTTGGATCAGTACCACCAATCTGGGAGATACAGGAGGGACGTTTTGACCAGTGGAGAAGACGATTTTGAGGCGATTCAGGGCAATGACGTTACAGTTAAGAGCTATAAGGTGGAGAGCAGGATCACGTCGCGGTTCGCTCACACCACCGTCAAGAGCTCTGTGGTCAACTCGGGCCCGGACGCCCAGAGCATCGGCTTCAACGTGCAGATCCCCAAACGAGCCTTCATCAACAACTTCACCATGAATGTCAATGGGATCACGTTCGTCGGCTCGGTGAAGGAGAAGACTGTGGCACGAAACCTTTACGCTCAGGCAAGGGCTCGTGGGAAAGCGGCCGGCATTGTCAGGGCTAACTCTCAAGCAATGGAGACGTTTAGGACGGAGGTGCACGTTCCCCCGGGCAGCAAAGTGGAGTTTGAGCTGCACTATCAGGAAATGATGCAGAGGAAGCTGGGCGTCTACCAGCACACCCTACACCTGCAACCCGGACGCCTGGTCCCGCTGATGCAGGTGGACGTGTATATCTTCGAGCCCAAAGGCATCAGGTTCGTCACGTCCACGAACACGATGGGAGAGCAGTTTGCGGATTCGACCAAAATCAGCCACACGAAAGACAAAGCCCACGTTGCGTTCAAACCGACTCTGCAGCAGCAGCGCAAGTGTGAGAACTGCACGGAAAGCGCGGTGGATGGTGTGTTTGTCGTGCAGTATGACGTGGAGAGGGAGAGCAATGCTGGAGAGCTTCAGGTGTCTGACGGTCATTTCGTTCAGTTCTTTGCTCCGTCtgatctctctcctctctccaaAAACATCGTTTTCGTCATCGATGTGAGCGGAAGCATGTGGGGGCTGAAAATGAAACAGATGGTGGAAGCGATGAAGGCTATTCTGGACGATCTGTCGATGGACGACTATTTCAGCATCATAGATTTCAATCACAACGTCCGTTGCTGGAGCGAAGATCTGGTCCAGGCTTCCTCCATCCAGGTGGATGAAGCTAAAAAGTATGTCCAAAGCATCAAGCCCAGCGGAGGCACCAACATCAACGAGGCTTTACTGAAAGCAGTGCAGATGCTGGTAAGAGCATCCAATCAGGGACTGATCGACCCTCGTTCTGTGTCTATGATCATTCTGGTGTCTGATGGAGACCCGACCGTGGGAGAAATAAAGCTGAGCACCATTCAGAAGAACGTGAAGCGCGTGATGAGGGAGGAGTTTTCGCTGTTCTCTCTCGGCATTGGCTTTGACGTCGACTTTGACTTCCTGGAGCGAATCGCCATGGACAACAGGGGCGTCGCCCAGAGGATTTTTGCCAATCACGATGCAGCAGAACAGTTAAAGACGTTCTACAGTCAGGTCTCCTCTCCCCTCCTGAGGTCCATCACCATTCATTTTCCCGAGAACACCGCGAACAATGTGACTCAGAATCGCTTCGACAAGTTCTTCAGCGGCTCCGAGCTGATAGTGGCTGGAAAACTGCAACCGTCAGACCTCACGACGCTGCAAAGCTTCACCACAGCCTCCGCTGCCAACATGGACCTGAACATTCAGACGGAGGCAGATATCGGGGAGTTGGATTCTGTGCTCGGCACGCATTCACATTCGTTCACCGGCTTCGCTCGGCAGATGTGGGCTTACATAACTGTCAATCAGCTAATGGCCGAACGCTCCCTAGCTCCTACCGCAAGTAAGAAGCGTAGGATCACCCAGAGGATCGTGGCGCTGGCTGTGGAGCATCAGTTCGTGACCCCCCTCACCGCCATGCTGGTGGAGGGCGAGGACCAGGGCAGGCCAGAACGACTGATCGCAGACTCGCCTAAAGACTCGAAACACGGCTGCTGCTCAGCCACTGCTCCCTTAAGTGGACGGCCGCCGGTACAACAGATGGTCTATTCCAATCCTCCGTGGGTCCTGCCTACAGCTGCTCCAACTCCTGGACAAGTAGTTAGACCTATTCCTGACCACATCATTTCTGTGGACAACGATCCCCACTTCATCGTCCATTTACCCAAAAACAACATGGACGTCTGCTTCAACATCGACTCCAAGCCTGGACACATCCTGAACCTGATTTCAGATCCCGGAACAGGAGTCACAATCAACGGTCAGTTGGTCGGGTCTAAGAAGATGAAgaacaataaattaaacacGTATTTCGGCACCATCTCCATATACTCTAAAAAAGACGGGGCGCAGGTTATAGTAGGAACCGACAGAATCGAACTGAGGGAAGGAAGGAACAGTCACTCCTTCTCTTGGGGAGCCACGGCTGAGCTGGTGCTTAACAGGATGAAGATCACTATAGTGAAAGAGCAACATGTTACCGTAACAATCAACGGGAGGATTTCAGCGATGGTGCTTTTGCATCGGGTTTGGAAGAAGCATCCCGTGCAGGTGGACTTCCTGGGCATCTACATGTCTAACGACAACAAATACTCCGCGCAGGTTCACGGCCTCATCGGTCAGTTTGCGCGAGAACCAAACGTAAAGGTGTACGACGTGCACGATGGAGCAGATCCGAAGAAGAAAGAGGCCACAATGGAGGTGAAAGGCAACAAATTAGCCGTCACCAGGGGGTGGCAGAAGGACTACAGACGTGACAAGAAACGAGGTTCAGACGTCTACTGCTGGTTTATCCATAACAGTGGGAAAGGCCTCATTGATGGCAGTTACACCAGCTACATCCTGCCTCGGCTGGACAGCTTCCTGACCTCCGTCTGAGATAACGAGCGCGCGGCGGCTAGGTTAGGATACTCGCTAAAAGATCAGCGGGAATCCGTTATTTTATACAAGGAATTAGAATTGAAGAAAAACGAAACATgccagctttaaaaaaaaaaaaaaggtttttaatacaacaagaaaatatatacaaaacataGGAAAACTGGAATCACAATCAAAAATCTAATTGATGTATAAGACTTTTGACTTTCTGAGCGTTTGCCGTGCAACGTTTAATTGAGAGTTTGCTTGATTAAATCAGACCCCTCCCCCAACGGCGCAATAAAAACCCATTGGTCAATTTC

Function

GO: NA

KEGG:

id description
K19015 ITIH2, SHAP; inter-alpha-trypsin inhibitor heavy chain H2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250594.1 lncRNA downstream 82626 12988707 ~ 13071520 (-) True LOC122342546
XR_006250593.1 lncRNA downstream 82626 13022123 ~ 13071520 (-) False LOC122342546
TU41980 lncRNA downstream 82993 12988876 ~ 13071153 (-) False LOC122342546
TU41701 lncRNA downstream 885406 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 916009 12236645 ~ 12238137 (-) True LOC122342788
TU42001 lncRNA upstream 12838 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 63577 13227700 ~ 13227947 (-) True G28349
TU42028 lncRNA upstream 64971 13229094 ~ 13229319 (-) True G28350
TU42033 lncRNA upstream 78383 13242506 ~ 13245388 (-) True G28353
TU42039 lncRNA upstream 86528 13250651 ~ 13252034 (-) True G28359
XM_043236346.1 mRNA downstream 3440 13146654 ~ 13150706 (-) False atp5f1c
XM_043236345.1 mRNA downstream 3440 13146654 ~ 13150706 (-) True atp5f1c
XM_043236347.1 mRNA downstream 3440 13147950 ~ 13150706 (-) False atp5f1c
XM_043237675.1 mRNA downstream 9238 13102315 ~ 13144908 (-) True taf3
XM_043236663.1 mRNA downstream 68582 13076300 ~ 13085564 (-) False gata3
XM_043236651.1 mRNA upstream 12897 13177020 ~ 13186890 (-) True tmem110l
XM_043237035.1 mRNA upstream 103952 13268075 ~ 13275467 (-) False pfkfb3
XM_043237034.1 mRNA upstream 103952 13268075 ~ 13275381 (-) False pfkfb3
XM_043237036.1 mRNA upstream 104411 13268534 ~ 13275474 (-) True pfkfb3
XM_043236447.1 mRNA upstream 117060 13281183 ~ 13301329 (-) False rbm17
TU41785 other downstream 664990 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 664990 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1138379 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1608334 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1730063 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 152809 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 152809 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 160402 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 247501 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 528822 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile