RNA id: XM_043236355.1


Basic Information

Item Value
RNA id XM_043236355.1
length 2439
RNA type mRNA
GC content 0.48
exon number 8
gene id mkrn1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6044883 ~ 6054197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTCCGAAAATGGCCGAGCGCGGAACAGCCGCTTTCCGGAAGATCCGGGTGCTGGGGCTTCAACATAAACAGCAATGGCGGAGGCAGCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATTTCATGCACGGGCTTTGCAAAGAGGGCGACAACTGTCGATATTTACACGACCTCAGCAGCTGCAAGCCAACCATGATCTGCAAGTTCTTTCAAAAGGGATGCTGTGCTTTTGGGGACCGTTGCAGGTATGAACATACTAAACCTGCCAAGCAAGACGAAGTCCCTAGTTCTAAGCCGCCGGTGCCGCTGACCGCTGCTCCCCTTGCTGGCACTCCTGATCCCGTGTCTGATGGGCCAGGTGGTACGACCGATGCCCAGGAGAAGCCCCAAGGCTCGGGGGCAGTGGACTGGGTCAATGCTGCCGAGTTCGTGCCAGGGCAGCCCTACTGTGGGAGGGCTGATCCAGTGCCGCTCGAGGGGCCTGGACCTCTCATCGAAGAAGAGTATGAGAAAGAACTAGCTaacaaagaaatgaagaaacagCTTTGCCCGTACGCCGCCGTTGGCGAATGTCGCTATGGCCTCAACTGCGCCTACCTCCACGGCGACGTTTGTGACATGTGCGGCCTACAGGTTCTCCACCCTTCCGACACCTCTCAGCGCTCGCAGCACATCAGGGCCTGCATTGAGGCTCACGAGAAGGACATGGAAATTTCTTTTGCCATCCAGCGTAGTAAAGACATGATGTGTGGAGTGTGCATGGAGGTGGTGTTCGAGAAAACCAACCCCAGCGAACGCCGTTTCGGCATCCTCTCCAACTGCAGCCACTGTTACTGCCTCAAGTGCATCAGGAAATGGCGGAAGGCCAAGCAGTTCGAGAGCAAGATCATAAAGTCTTGCCCAGAGTGTCGAATCACATCGAACTTTGTCATACCAAGCGAATACTGGGTGGAGGACAAGGAGGAGAAGCAGCAGCTCATTCAGAAGTACAAGGATGGCATGGGGAGTAAACCCTGCCGATATTTTGATGAAGGCCGTGGAACCTGTCCGTTTGGAGCCAACTGCTTTTACAAGCATGCCTTTCCTGACGGGCGTCTGGAAGAGCCTCAACCCCAGAGGAGACAGACCGGTTCCAACGGAAGAACCCGGAACTCCAGACGGACGCCACTCTGGGATCTTTTCGACGAGCGGGAGAACAGTGACTCCTTCGACAATGAAGATGAGATGGTGACGTTCGAGCTCAGCGAGATGCTCCTCATGCTTCTGGCCGCCGGAACCGACGATGATGTTACCGACTCCGAAGATGAGTGGGACTTGTTCCACGAAGAGCTGGACGATTACTACGAACTGTACCTATAGCAGGCCTCCTTCCGTCCTTCGCTAACTCCCTCCTAGACTAACCCTCGTCCCTATTTACTCTATTTCTATCCCTGTTAGAAACTAGACAGAACTGTCTTGTGTGACTGATGGGCAGTAGCGTCTTTTTTCCCCTGTGTTGTGGCAGTGCCTTTCAGCAGgccattaaaacaattaattcatttcagattcaataaatgaatataaaacacacgtcaaaagacattaaaatagctcttgtgctaaaaaaaatattttctagaaCGCCTTCTCCATTCTGTGAGTCTGTCCATGTCTGGTTAATGTACTAGAATAAGTataaagagcaaaaacaaaagtaatttaaaaaattgcaagAAAGGACACTAAGTTATATAAGAAATTGGAAAGATATAGCTAACAAACCTGGCCGAGTTTATCTCAGGAGTGGGTTTGACATGTTTATTATTGACTGTGAGGATACAGCAACTGTGTATGACTTCACTAACTGGTGGCTGTTAATGCTTctgatatttttgaaatatccCTCTTCTCATGCACTGATTCTGACTGGGTGGGAGGTGGTGGTGATGGCGGGGAGCTTCCTGGATGTCACAAATGCACTCGTCAACGTTCACATGGACAACCCGTGTAACCTTTATCCCTAAATGTTTTGTTCCTCACGATTAAATTAACCTccgagttgtttttttttttttttttgtacccgTTTAGCTGTACCTGTGTAGCTGTGGTATCCCATGGGAAGTCCCTACGAACTGAGTGCGCCGATAATTTGTGAATCTGGACTCCCAAAAGCCGacttaaatgcattcaaatatgaagCTGAATGTTCATCAGTTTAACTGTCTATTAATTGTAAATCTGTTTTGCTTCAGTGAATATTGCATATTAAGCTCAGCTGGCAGTAGTCAAACCACAAACACCCAATTGTTATTCGGTTCTTGTCGAACTTGGTTGATATGCATATGTTTATACAGAAATGTGCTTGTTTTCTATGGTTCAGAACCATCCAATGTAACTTGAAATTAAAGTTTATTATCAAATTA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250637.1 lncRNA upstream 121967 5917504 ~ 5922916 (+) True LOC122342718
XR_006250636.1 lncRNA upstream 128636 5914217 ~ 5916247 (+) True LOC122342717
TU39190 lncRNA upstream 131730 5911079 ~ 5913153 (+) False LOC122342716
TU39343 lncRNA downstream 162644 6216841 ~ 6297920 (+) False G26517
TU39345 lncRNA downstream 162644 6216841 ~ 6297920 (+) False G26517
TU39341 lncRNA downstream 241936 6296133 ~ 6297920 (+) False G26517
TU39342 lncRNA downstream 241936 6296133 ~ 6297920 (+) False G26517
TU39344 lncRNA downstream 241936 6296133 ~ 6298080 (+) True G26517
XM_043237912.1 mRNA upstream 29046 5941826 ~ 6015837 (+) True tmem178b
XM_043236976.1 mRNA upstream 146056 5862607 ~ 5898827 (+) True LOC122342837
XM_043236201.1 mRNA upstream 163606 5877534 ~ 5881277 (+) True LOC122342428
XM_043236202.1 mRNA upstream 168754 5872659 ~ 5876129 (+) True LOC122342429
XM_043236287.1 mRNA upstream 182570 5850488 ~ 5862313 (+) True LOC122342465
XM_043236356.1 mRNA downstream 961 6055158 ~ 6059544 (+) True tmem121b
XM_043236369.1 mRNA downstream 139312 6193509 ~ 6234938 (+) False lmo3
XM_043236371.1 mRNA downstream 139313 6193510 ~ 6234938 (+) False lmo3
XM_043236372.1 mRNA downstream 142394 6196591 ~ 6234938 (+) False lmo3
XM_043236368.1 mRNA downstream 143212 6197409 ~ 6234938 (+) False lmo3
TU39185 other upstream 147112 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 191502 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 191502 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 645916 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 653257 5354332 ~ 5391626 (+) False pcloa
TU39399 other downstream 334640 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1171324 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1315938 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1319657 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 1478723 7532920 ~ 7558489 (+) False ube2h

Expression Profile