RNA id: XM_043236371.1


Basic Information

Item Value
RNA id XM_043236371.1
length 2344
RNA type mRNA
GC content 0.47
exon number 4
gene id lmo3
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6193509 ~ 6234938 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGAATGTGGAGAACTGGAGGTTGGGGATCTAATTACCGGGCCATAATTGGGGGCTAGGGAATAGGTTGCCGTCCTCTCAACTCGCTGCAGATCAATTATGTTAAGAGAACATCTGTAAGTAGAACTTAATGAGGTCCATTAGAGCAACATGCGCTGCCTTCCCTAACGGTGCTTGTCAGCTTCTTGGATGAGCTGGAGTGTGCTGCTAACTAGGGACCTGGTGAAGGTGCTTAAATAGGCGAGGAGACGTGCGGGCCGGCTCAGGTCTGTTTTGCTTTGCTGCCAGGGAGGGAACGAGACCGCGAGCGAAGAAACAGCCGTCGTGGGGAGAAGGAGGGGAATCTTTTTAGAGCGGGAGCGAGGAGGAGTTGCACCGAGGCGGGCTGCGTGTTTTTAACCCGCTCACCTGGAACTTGACAAGGGAACCGGCTATATTTGAGCTGCCATCTCGTCTTAATCGCCAACTTTTCCTCGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCTTGGACAAGTACTGGCACGAAGACTGCCTCAAGTGCGCCTGCTGCGACTGCCGACTCGGCGAGGTGGGCTCCACGCTGTACACCAAAGCCAACCTCATCCTCTGTCGGAGGGACTACCTACGGTTGTTCGGTGTGACGGGGAACTGTGCGGCTTGCAGTAAACTCATCCCAGCATTCGAGATGGTCATGAGAGCCAAGGAGAACGTCTATCACCTGGACTGCTTCGCCTGCCAGCTGTGTAACCAGAGGTTCTGCGTCGGAGACAAGTTCTTCCTGAAGAACAACATGATCCTGTGCCAGACAGACTACGAGGAAGGACTGATGAAGGAGGGCTACGCGCCGCAGGTCCGCTGACCACCCCACGACCCCGCCGCTCGCAGAAGGGGAACGAGCTGCGAGAGGACCTGAAGGGGACATGCAATCAGACACAAGAAGCACTAGTGTCCTCTCCAGCCCCTGTCCCCATTACATTGTATATATGAAGAGTCCACATAAGGGACGGTGTACTGTACAGATTAGCCATAGAGACGTTTTTGGTAAGTGGGAGAACGTTCCGAGACGGACCAAGACTGTGGTTCGGTTTTAATGGCGCTGCCTGACGGCCTTATGAAGACCAGACATCTCAATGGCCAGACTTTTATGaactttaacacacacaaacgtacAACCCCAAGTCCAAATCGCAATTGTATTTCACTTGCTTTACAGGGTGAAGACtacatagttaaaaaaaaaaaaaaaaatgaaatccagTATTTATTGGCGAATGAGAAGAAAAGGAGCCATGTCAACGTAAGATCTCAGGTTGAATGGGTTTCCTCATTGTCCTTTCTATTTTTCGTTAACATTGTATCTCAATTGCGTTTTCAGCAACAAGCTATTCGGATGAAcacaaacagccaatcagaagataTTTGATGTTTAATGTACAGTTACGAGAACCAATGAGATTTCACAGTGGGCGGAGCTACCCAGCACAATGTCCTGGCTGTTTAGGACAACTTCGAGAAATGGCACCTTGTTCGCTTTCTAACAGATCTTTGAGCTTCGACATCTTCAGCATCAAGTGGTGTAATTTTATTACTGgtattttgaaaaatttctCTTCCCTGTTTTATACCTATAAAGGCCCTATAGCTGTCAAACGCGAACTCTTTGAACATTTGGGTTTGGCAATTGGTGTGTAAACGATGGGTTTGTTACTTTcttgactgtatttatttaataggcTTTTCGTCATTGCGCGTAACTCAAGGCTCTGTTCCTGACATGTTTATACCTGAACTGAATCACTGCTCAGTCGCCAAGCATCTCCTCCAGACGTGACGAACGTCGCCTCGTATTTTTTTGTGCGGCCCATGTTGATCAGCTGACATAATCCTCTTTAAACACAATCAGGTCGCATAAACTGTGTAGGCATTACTGGGGCACGTGAATACCTGGTCGGAGGATTTGCCTTTGCCGGGTTTTGTTTACTATCGACTCAAGGCGACACGCAAGCGTAAATCACTACTGTAGCCTACTACGTTGATAATCCTTTTACAGGCTATGATTACCTTTGGAAACCGAGGGCATAGCCTAGAGAAAATATGAGGACAAACTTAATTTGTATATGGTGgttgtacatatttaaaaataaatattcctttTTGCTTGCTATTGTAtatggattttctttttatgtgttATTCAGCAtgagatgtttatttttaggaCGTGTACATACTGTACTGTAATCATTTTAAGCACAAATGTAAtacagttttattgtgttaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250637.1 lncRNA upstream 270594 5917504 ~ 5922916 (+) True LOC122342718
XR_006250636.1 lncRNA upstream 277263 5914217 ~ 5916247 (+) True LOC122342717
TU39190 lncRNA upstream 280357 5911079 ~ 5913153 (+) False LOC122342716
TU39341 lncRNA downstream 61195 6296133 ~ 6297920 (+) False G26517
TU39342 lncRNA downstream 61195 6296133 ~ 6297920 (+) False G26517
TU39344 lncRNA downstream 61195 6296133 ~ 6298080 (+) True G26517
TU39419 lncRNA downstream 164229 6399167 ~ 6404399 (+) True G26585
XR_006250600.1 lncRNA downstream 750305 6985243 ~ 7013661 (+) True LOC122342579
XM_043236356.1 mRNA upstream 133966 6055158 ~ 6059544 (+) True tmem121b
XM_043236355.1 mRNA upstream 139313 6044883 ~ 6054197 (+) True mkrn1
XM_043237912.1 mRNA upstream 177673 5941826 ~ 6015837 (+) True tmem178b
XM_043236201.1 mRNA upstream 312233 5877534 ~ 5881277 (+) True LOC122342428
XM_043236202.1 mRNA upstream 317381 5872659 ~ 5876129 (+) True LOC122342429
XM_043237103.1 mRNA downstream 137120 6372058 ~ 6383263 (+) True wif1
XM_043237105.1 mRNA downstream 153605 6388543 ~ 6390027 (+) False vhll
XM_043236715.1 mRNA downstream 406925 6641863 ~ 6654653 (+) True cand1
XM_043238039.1 mRNA downstream 421731 6656669 ~ 6662354 (+) False si:dkey-39a18.1
XM_043238041.1 mRNA downstream 421752 6656690 ~ 6662354 (+) True si:dkey-39a18.1
TU39185 other upstream 295739 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 340129 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 340129 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 794543 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 801884 5354332 ~ 5391626 (+) False pcloa
TU39399 other downstream 153899 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 990583 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1135197 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1138916 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 1297982 7532920 ~ 7558489 (+) False ube2h

Expression Profile