RNA id: XM_043236374.1


Basic Information

Item Value
RNA id XM_043236374.1
length 1311
RNA type mRNA
GC content 0.41
exon number 4
gene id mgst1.1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6252769 ~ 6255043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctgttgtgtgtgtgtgtgtgttttatattggtTTTAGTGTGTATTAAATATACTATAGCATAATGCACAACTAGGCGTATTTTCAGAAAAGAGAGGTCACCCTGAGAAGTGTAAAAGAAAACGTTATAACCAGCATCGCATAAGGGAGGTATTAGCAAACGCGTTCACTATTGATGGGCTTTAGTTAATTTATTGCCTGAACGGTGGCTTTGCTACATGTGCTACTGTTTGAACTAAAGCGACGTCCCTGAGGAAGTCTGAGCTAAACTCGCTCAACAGTTCgttgaaatgctgtttttccgGCACGCCCACCGTCTCACGTTAGTTCAGGAGTGAATGGATGCGAGTGAAACCGAGTGGCTTCAAAAAGATGGCAGAAATCGTACACATGATTGACAGCGAGGTTTTCCTGGCCTTCTCCACGTATGCAACCATAGTCGTCCTCAAAATGATGCTCATGAGCTTCATGACCTCATACTTTCGCCTGACAAAACAGGTTTTTTCAAACCTGGAGGACACCATGTTGGTGAAGACAACAGAAGACAGGAAAAAGCTGGTCAGGGTCGATCCGGATGTGGAAAGAGTGCGACGGGCCGGATCTCTCCACGGCTCTGTGGCACTTCCGGGTGTTTGTGGGGTCACGTTTCATCCACACTGTGGCCTATGTGATGGCTCTTCCCCAGCCTACCAGAGGTCTGGCCTTCGGTGTGGGGCTGCTAGCAACTTTTTCTATGGCTTACCGGGTGCTCACCACAGCACTTTTTCTCTAATGGATTGCATTCACTTCATGAGAAACCATTTAGTTTGAGTTGACACGCaatgtttttacaatgttaTGTGAAAGAAATGTTGTGCAAgttatattgctgtttttgtgttttgtatttgctTTCACTACCACAGTCCCACGAATGAACTTCATACTGTGAAtgaccacaattttttttaaaagtaatcattcacaatataaatcaatataatactgctgataatatttaattaatgtaaatctTTAACTCCTGACACACATTTTAGGATGAGTCTAAAGCTTGACCAGTTCTATACACAGTGAACAGATATTTGGTTGTTGTTACTTATTAATCACGATAAGACTTTGGATTGTGCCTGGTATTTAAGTCGGCCTCCATTGAACAGTTTCGCTGCAGCTGCGAAGACAAGCAAAGGGAAGATTTTAATTTGAGAagtaaattttaatgtttattgtcaGCAGGTTTAAAGAAAGTATGaacaataacaaaatgtttatgcattagataaagtttgaaaataaaacgCAATGTTTCTGACAA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39377 lncRNA downstream 121 6207174 ~ 6252648 (-) False arhgef39
TU39371 lncRNA downstream 17831 6186089 ~ 6234938 (-) True G26541
TU39373 lncRNA downstream 45260 6193389 ~ 6207509 (-) False arhgef39
TU39326 lncRNA downstream 89240 6161123 ~ 6163529 (-) False arhgef39
TU39306 lncRNA downstream 168559 6083590 ~ 6084210 (-) True G26490
TU39386 lncRNA upstream 11789 6266832 ~ 6267414 (-) True G26556
XR_006250660.1 lncRNA upstream 122073 6377116 ~ 6389201 (-) True LOC122342911
TU39723 lncRNA upstream 586931 6841974 ~ 6843849 (-) True G26787
TU39728 lncRNA upstream 590516 6845559 ~ 6908495 (-) True G26790
TU39733 lncRNA upstream 605031 6860074 ~ 6862247 (-) True G26795
XM_043236364.1 mRNA downstream 139 6085892 ~ 6252630 (-) False arhgef39
XM_043236363.1 mRNA downstream 139 6085892 ~ 6252630 (-) False arhgef39
XM_043236362.1 mRNA downstream 139 6085892 ~ 6252630 (-) True arhgef39
XM_043236359.1 mRNA downstream 139 6085892 ~ 6252630 (-) False arhgef39
XM_043236367.1 mRNA downstream 56474 6085892 ~ 6196295 (-) False arhgef39
XM_043236375.1 mRNA upstream 703 6255746 ~ 6257542 (-) True mgst1.2
XM_043237831.1 mRNA upstream 20042 6275085 ~ 6281017 (-) True dera
XM_043237832.1 mRNA upstream 23016 6278059 ~ 6281017 (-) False dera
XM_043238009.1 mRNA upstream 26405 6281448 ~ 6289610 (-) True helb
XM_043236876.1 mRNA upstream 35057 6290100 ~ 6294999 (-) True irak3
TU39270 other downstream 312770 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 339231 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 399403 5850404 ~ 5853366 (-) True G26414
TU39171 other downstream 515823 5730018 ~ 5736946 (-) False G26408
TU39610 other upstream 95460 6350503 ~ 6361443 (-) True msrb3
TU39663 other upstream 482598 6737641 ~ 6739595 (-) False il22
TU39958 other upstream 1300072 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1992868 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 2205463 8460506 ~ 8468028 (-) True G27232

Expression Profile