RNA id: XM_043236380.1


Basic Information

Item Value
RNA id XM_043236380.1
length 1066
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122342536
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2912178 ~ 2913479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCAGCGAGCGCACACAGTATATAAAGCTCTCTTCATGAAAACGGGATGAGATAGTTTGGATGGTTTGGAGATTGAGGGAGGCGAAGGCAAGTAAGAAACATGAAGACCGTAGCCTTTCTCTATCTTTGGTTCTTATATTTTGGGTACACTCTCTGTAGTCCTAGTCAGACTTCGAATATGAAAAATGTGACGAATGTTTATGAGTTTCTCTGGGAGAACAATGCAGACATTGCCAATGAGACGATCAGACTGGACTTCCTGATAGAAATGCAGAACGGCAGCCTGCAGGCGGAGAGATACATCAACTTCACCATCCAAGACATTAACTATGTACTGAACGTGACGAACATGCTGAAGAATTTAAGCGTAACTGTAACTCGGCCCAGTGACCTCAAGACCTTCTTTATGGACAGATACTCGAGCTACAATAGCTTTGGAAAGCTGATGCTCCAACAATACGGCTTCACGAGCACGCCTCCCATTCGGCAAACTCCAGCTATGAAGCAGTATCTCTCGTACTACAGACACCTGATGATGAATGAAGACCCGCTGTACTTCGCTGTGGGTCTTCTGCCCTGCTCCAGACTCTGGCTTTGGCTGGCGGATAATCTCAGCACTCCTCCAACCAATGCCTACTACACCTGGAAGGTGGAGAATATGGAAGGCAATCCCGAGAAACACTACAAAGCTCTGCTGAACAAGCATCTGAACACAACTGCGAAGGTGCAGAAGGCTAATGTTGTTTTCCGCGCTCAGATGCAGCACGAGCACGATTTCTTCTACTCGTCTTGAGGGAGAAATGTCGCAAACAGCCTTCTGTCTAATCAACTCAATGTTCCTCGAAAACGTGATTTGAAGTACTTCACGGCTATGGAATAAAAATGAACGAATCGATTAAAAATTCTTTACTCTTTTAACCGAATCACATCTTTTAATCACGAAAACGGCGTATACACAGCCAGTTTCAACAGAAATGTAATTCTATGCTATTGTTCctgaatttttactgtttttcttctttgcattacccagcaacaaataaacaaaaatactacaACACGTC

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250771.1 lncRNA upstream 86389 2790078 ~ 2825789 (+) False LOC122343411
XR_006250770.1 lncRNA upstream 86389 2795818 ~ 2825789 (+) True LOC122343411
XR_006250772.1 lncRNA upstream 124521 2726802 ~ 2787657 (+) True LOC122343412
XR_006250552.1 lncRNA upstream 192817 2686424 ~ 2719361 (+) True LOC122342395
TU37817 lncRNA downstream 17629 2931108 ~ 2931859 (+) True G25453
TU37820 lncRNA downstream 21683 2935162 ~ 3030892 (+) True G25455
TU37821 lncRNA downstream 21683 2935162 ~ 2936229 (+) False G25455
TU37823 lncRNA downstream 104088 3017567 ~ 3024764 (+) False G25456
TU37828 lncRNA downstream 104088 3017567 ~ 3024764 (+) False G25456
XM_043237665.1 mRNA upstream 3483 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236336.1 mRNA upstream 49789 2847274 ~ 2862389 (+) True elk3
XM_043237770.1 mRNA upstream 270341 2622539 ~ 2641837 (+) True mdfic
XM_043237879.1 mRNA upstream 309677 2505946 ~ 2602501 (+) True foxp2
XM_043237682.1 mRNA downstream 2682 2916161 ~ 2920243 (+) True phyh
XM_043237080.1 mRNA downstream 9742 2923221 ~ 2927098 (+) False ucmaa
XM_043237079.1 mRNA downstream 9744 2923223 ~ 2927098 (+) True ucmaa
XM_043237075.1 mRNA downstream 24593 2938072 ~ 2941597 (+) True cdc123
XM_043236798.1 mRNA downstream 30445 2943924 ~ 2994499 (+) True camk1da
TU37230 other upstream 1124082 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1239219 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1620954 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2246648 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2538096 373527 ~ 374082 (+) True G24632
TU37871 other downstream 202029 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 206050 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 525652 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 527433 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 533579 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile