RNA id: XM_043236407.1


Basic Information

Item Value
RNA id XM_043236407.1
length 3028
RNA type mRNA
GC content 0.51
exon number 6
gene id zmp:0000000926
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25517396 ~ 25553833 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCCAGCACGTCCAGCAGCTCAGAGACGTTCCCACAATGAGTGAGAGCTGTATCACGACAGGACCGAGTCTAATTATACACccacagagagagggagagacaggaGGGGGTCACAAAGGATTACTGCTAACCTGTCTGggcctttttcttcttctgctaAAAGaagaGCTGCAGGTGTGATGGACTGCTGGAGTAAGTGGCATCACATGGATATCTGCTCAGCACACCCCATCAAGGTACTCCAGTGACATTCAGAAATAAGTTATATCTGTGAATCAAGTATACTGGTTAGGGCTACTGCAAGAGgtgagCGGGAGTTCTGAACGTGGCCGTGTGGTGTGTGCGTGATGCTGATCAGCAGAAGAACATGTCTTTCTCCTAGCCCGTTGTTCTTCCCAGCCCATGTAACCTAGAGTGGCCCAGAAGGCCCGGGGGATTGTCCCATGAATCCAAGCCCAGACCGCAGCAAGGAGTGTCTCCCCCCCAAAAAGCGGGACTCCCGACAGGGCTCATCAGATCAGCCGGCCCCAGAGGATGACTTCAAACCCCCTGCCCCTTTTCGAAGCCGAAGGCAGCACCACTCCACGGAGGGACACCGAGAGAGTGGGGATCTTCTACCACCGCCTCCGCCCACGCTGCCAGCCCTTCCTCTGTCGTTGCCTTGGCAGGTGTCCTATACTCCCTCTGTGCATCCCTCATACCTTCCGGTCCAGGTGGGACAGAGGCGGGGGTCAGCTTCGGCGTCCTGGAGAGAGGCGTTGTGTGGACGGGGTGTGGACGGAGGACTGGAGCACACTGCTGCCCATCACTCTCGTTGGCTGAGCAGCGACATCCCCCCGATTAGCATGCAACCGCTCATCTCCGTGCCCATGTTCAAAAGTGTCTACGCAGGCGAATCCAGAGAAATGTGGTCCTATGGCCCCGGTCGGCGAGACTATAGCTCGTCTCTCTTCTCACCTCACCTCTTTCCACAGCCTCCGGTTTATCCCCATGACACTCTCTCAGAAAGTAGACTCAGGTACCAAGGCAGACGGCCCAATGGTGTCGAAGGCACAGAACTTGTGTCTGGGCCTAGCAGAAGGATGCCCTCTTGCGATGAACGTGGGAATGACAATGATGGTCTGCATGCCAATGGCAGGAGAAGACAGGACAACACAGCAAGACAGACCACCGGAAGAGGCCTTCTGCCACAAGAGAGCACAAGTGCACATTCCTCACCGTGGGACAGGGACCCTCGGGGAACACCCAAAACGCCAATACCCCCCTCGCCAGATGCAACAGGAAGAGCCGTCACTTCTCAGGACCATTTCGGTAGTAGTGCCTCTCAGGGTGGGGCTCAGATCTTCTATGCTGTGGGGTCCCTTTGCCAATCTGCCCACCATAACTCTCAAAAGTACCCACAGCTTAGTGCTTCTGTGTCCTGCTCCCGGAGGAAGTCCCAGCACTTCCTGCACAGCCAACCCAACAGCCATGGGGTGGAGACAGAATGGGATCCTTCAGCAGGGTCCTATCATGCTCCTGTGGCTATGCTCACCGGCCCTGACCCACCCCCTTCTGCAGTCCTACCTCATTTTGCCAAAGGTTCTCTGATCGAGCTGGCCGGCGGCCATCTGAAGAGGGTGGAGGAACTAAAGACAGAGGATTTTGTGCGCAGTGCTGACACCTTGCCTGAGTTTCACCTGAGCACCTGCACTATTCTTTTAATCTCACCCGGACCCACATATGGCTTCAACCACTTGCAGGTCTTGCTCACAGACCGCAACACTCAGGAGCTGCTCACAGTCTTGGCAGAGTATCCGTTCTTCGTACGGGACCGCGGCTGGTCTTCTTGCAGTCCCCAGCGGAGCGCACAGCTGTATGGCCTGCAGTGCCGTCAGCTCAGCACCGGCGATGTGTGTCTGGCACTGACTCCCACACCTGCTTCACCTCACCTCAGTCACAGGCGCTCGGAGGACGCAGTGGTGGTAGAGAGGATGCCCCCTGACCCCGCACCTCCGTCTCCGTCAGAGGGACAGCCTTCTCCTTCTGGTTTACTAAGCCAGCCGCCCCGTGCCCGAAAGAGACGCTGGTCGGCCCCTGAGCTCCAGCCAGGAATTAAGACTAGCACCCATTTACCTCAAGGCTCTAAACACGAGAGACAGCAGTAAGGTTTCGAACGGACACCACAGGAAGGTCTAGAGTCTAATTATTGGTAACCTCACAGATACCGTGGAATAGCTAGTAAATTGTTCCCCTTCTTTCCTCCACTGTTCAATGTGATTTCAGAATGTAGAACAACACATGCTAGCCAGTTCCAAAATGCACAGTGAGACAATCAAAAATCACTTCTTTGTGATGCCACGCACCTTTTAGTTATGCTAATCTCAAGCCTTTTTCTGCAGGGTATGTCTTTTTAATCCGTATTATAACAAGCCAATACTACtggaagaaaaaagacaaagtacacacatatataccaTATTACGAGTGTTCTGTGAATATGCTACAGAAATAGTCTACTGTTAAATCTGTAATGAAGTCTTGTTTCACGCTTATGAACTGTGCATGTACCTTCAGTCTAGCAGGCAAGCTGAATGTATTAAGCAGCCTTCAGCCAGGCTTTCAGTGTGGGGTCAATATGCTAGTTCACGTTAGCATTACGCTCCAGCCTGTTCTTATCGAGGGAAGAGACACTAATGTGGGAATGAAAAGCACACGCGACCCTGGGCCTGGTGTTTTTGAAGAGTGATGGTGCTAATGACACATCAGAAAAGTCCTCTGGTGATTGTGGGTTTCCCTTTGACATTTCATTGTGAAAAAGGACAGAAATCTAGTGTTTTGAAATCAGATACGGGTATATCTACTCATGATTAAGCACACTCtatcactttatttttctctcttttttgtggTTTCTCAAATAATGTTTGCTGTTAGTTTTTTGTTCCTTTGTAAATGTTCTAATTgctctaaaaatgtatatttttaaagttgtgAGACTGTAAAACAATGTTCgctagaaaaataaaagaacagctttttagattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46139 lncRNA upstream 201853 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 202810 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 528132 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 802408 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 843812 24672967 ~ 24673594 (+) False LOC122343086
TU46232 lncRNA downstream 126308 25680141 ~ 25685985 (+) True LOC122342771
TU46335 lncRNA downstream 233547 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 263198 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 263238 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 263238 25817071 ~ 25817455 (+) False G31388
XM_043236193.1 mRNA upstream 735065 24770632 ~ 24782341 (+) True LOC122342420
XM_043236178.1 mRNA upstream 750150 24743848 ~ 24767256 (+) True LOC122342408
XM_043236179.1 mRNA upstream 765013 24743848 ~ 24752393 (+) False LOC122342408
XM_043237250.1 mRNA upstream 829426 24679922 ~ 24687980 (+) True LOC122342991
XM_043237405.1 mRNA upstream 842994 24672891 ~ 24674412 (+) True LOC122343086
XM_043236418.1 mRNA downstream 19244 25573077 ~ 25609845 (+) True l1camb
XM_043236419.1 mRNA downstream 19244 25573077 ~ 25609845 (+) False l1camb
XM_043236420.1 mRNA downstream 19244 25573077 ~ 25609845 (+) False l1camb
XM_043236244.1 mRNA downstream 77528 25631361 ~ 25634808 (+) True lsm14b
XM_043236866.1 mRNA downstream 81209 25635042 ~ 25685872 (+) False LOC122342771
XR_006250558.1 other upstream 749854 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 788959 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 870835 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 878752 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 1046539 24465454 ~ 24470867 (+) False LOC122343023
XR_006250648.1 other downstream 81209 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 81212 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 139969 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 258798 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 271278 25825111 ~ 25825192 (+) True trnas-uga

Expression Profile