RNA id: XM_043236416.1


Basic Information

Item Value
RNA id XM_043236416.1
length 1611
RNA type mRNA
GC content 0.47
exon number 9
gene id irf10
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25554784 ~ 25567493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctctatatttcagcgcagccctGTGAAACACATCAAactgagaaactaacagaatgcatagtcgaaaAACTGGATAAAAATGCGCATGAGGAGTAAATTCGGAAGAAACGGAGATGCTAATGATCAGACTTCAACCCACAGATTGATGGAAGACAGGTCGAAGCACATGCGACTGAGAGAATGGCTCATAGCGCAGATAGACAGTGGTAAATATGCTGGACTGAGCTGggaaaatgaagagaaaaccATGTTCAGGATTCCCTGGAAACACGCGGCCAAACAGGACTACAGGCAGAACCAGGACGCCGCGCTCTTTAAGGCATGGGCCATGTACAAGGGTAAATTTCAAGAGGGCAGGGACAAAGCTGACCCCTCTACATGGAAAACGCGTCTGCGCTGTGCCCTCAACAAGAGCACAGACTTTCAGGAGGTTCCTGAGCGCAGTCAGCTGGACATCTCTGAACCCTACAAGGTCTACCGGATACTGGACGACACAGGAAGAGCTGCAGAACCTGCTGGGGACAGTGACTGTAGCAAAGTCTTGAGAGAGATGCATCTGCCCATACAGCAGGACCTTACCTTCGGGGACTCAAACAAAGCTGATGGATGGAGTGtgaaTGGCAGGACGTATGCGTGTCCAAGTATAGGCACTAACTCCATTCCTCTATACCCTTCTCAGGTCCCCATAACTGACTGCCGGCTGGAGGTGTGTTTGTTCTATCACGGTAACCTGGTGCAGAACCTCATCACTACGTCTCCAGACGGCTGCTTCATTCTGCAGGGCTGCGCTCCAGTTGGGAACGAGCGCATTTATGGTCCTTGTGAAGCCAAGAAGGTCTTTTTCCCCCGTCCAGACATCATACAGCTGCCCACGGGCATCTCCGAAGCCATGGCCCGTCTCCTGCCGCACCTGGAGAAAGGTGTGCTGGTGTGGGTGGCCCCAGACGGTGTGTTCATCAAGCGCTTCTGCCAGGGCAGAGTGTACTGGGACGGCCCTCTGGCAGAGAACAGGCAGAAACCAAACAAACTGGAGAGAGAGCGGACCTGCAAACTCCTGGACATGACCATCTTCATGCAAGAGTTACAGAACCATCGGCAGGGCATTGGTCCTGAGCCACAGTACACAGTCAACCTTTGCTTCGGAGAGGAGTTCCCTGACCCCAGCCAGACAAAGACCAAGAAGCTCATTACTGCACGAGTGATTCCTCTGTTTGCTGTAGAGTGTCTCCGCAGGCATAATGCACCTAATAATGTGGAGCTGAAGCAATCACCGCCACACAGGAAAACCAATGAATAAACAGATCTCAATCAGAACAGCACACGTTTCTCTATCCCTGTGGAGGAATTCACCAACACcgacattaaaaatataaataataataataataataataataataataataatgtgtttgtatCTAACATCAGAAGAAAGGAGAAATCTACTATGCTAACCTTTTCATTGACTGTATTAAGCTTTATGTCCTTTATAgtcttattaatattactaaccATGATactgattaaattacattatgatttctttatctttttgtaaaattatgctttaaaaattaaattaaaatgaagagtTTGGTTAGTCTTGTGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46175 lncRNA downstream 91240 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 117664 25436106 ~ 25437120 (-) True G31250
TU46148 lncRNA downstream 206139 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 239215 25315190 ~ 25315569 (-) True G31229
TU46136 lncRNA downstream 372440 25182013 ~ 25182344 (-) True G31225
TU46281 lncRNA upstream 67455 25634948 ~ 25635148 (-) True G31335
TU46297 lncRNA upstream 129937 25697430 ~ 25697757 (-) True G31351
TU46298 lncRNA upstream 134777 25702270 ~ 25703067 (-) True G31352
TU46336 lncRNA upstream 219887 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 245147 25812640 ~ 25813615 (-) True G31385
XM_043236135.1 mRNA downstream 57978 25487188 ~ 25496806 (-) True LOC122342354
XM_043236134.1 mRNA downstream 520110 25032134 ~ 25034674 (-) True LOC122342351
XM_043236132.1 mRNA downstream 573161 24963974 ~ 24981623 (-) True LOC122342349
XM_043236177.1 mRNA downstream 795477 24754056 ~ 24759307 (-) True LOC122342407
XM_043237382.1 mRNA downstream 924156 24627064 ~ 24630628 (-) False LOC122343065
XM_043236421.1 mRNA upstream 43122 25610615 ~ 25625124 (-) True samhd1
XM_043236423.1 mRNA upstream 59114 25626607 ~ 25629375 (-) True mtg2
XM_043236862.1 mRNA upstream 119084 25686577 ~ 25695667 (-) True kcnk15
XM_043236266.1 mRNA upstream 160601 25728094 ~ 25741253 (-) False LOC122342461
XM_043236267.1 mRNA upstream 160601 25728094 ~ 25740913 (-) True LOC122342461
XR_006250868.1 other downstream 167967 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 168410 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 169938 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 170379 25384248 ~ 25384405 (-) True LOC122343871
XR_006250844.1 other downstream 174964 25379657 ~ 25379820 (-) True LOC122343856
unassigned_transcript_476 other upstream 413973 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 417341 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 418472 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 418812 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 421117 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile